PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539818.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 170aa    MW: 19145.2 Da    PI: 10.0521
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539818.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.71.1e-06628123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C++Cgk F r  nL+ H r H
  KN539818.1_FGP001  6 FVCEICGKGFQRDQNLQLHRRGH 28
                       89*******************88 PP
2zf-C2H210.70.001783105123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kC +C+k +  +s+ k H + +
  KN539818.1_FGP001  83 WKCDKCSKKYAVHSDWKAHSKIC 105
                        58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.65E-8528No hitNo description
PROSITE profilePS5015711.614628IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.4E-6628IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.012628IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM003551304878IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.1E-471104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.65E-878103No hitNo description
SMARTSM0035516083103IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MATNRFVCEI CGKGFQRDQN LQLHRRGHNL PWKLKQRGSK EAVRKKVYIC PEASCVHHDP  60
SRALGDLTGI KKHFFRKHGE KKWKCDKCSK KYAVHSDWKA HSKICGTREY KCDCGTIFSR  120
SAPSSSSLLP PSMAIALAAL PCSFLIASVL AAACAFSWHS DEQESKQPIR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-2179120344Zinc finger protein JACKDAW
5b3h_F3e-2179120344Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13245KLKQRGSKEAVRKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539818.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1055040.0AK105504.1 Oryza sativa Japonica Group cDNA clone:001-127-D09, full insert sequence.
GenBankAP0033080.0AP003308.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1129G05.
GenBankAP0034130.0AP003413.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1151A10.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622202.16e-86protein indeterminate-domain 7
RefseqXP_015689076.19e-87PREDICTED: protein indeterminate-domain 7
SwissprotQ9SCQ63e-77IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A0D3EQD24e-85A0A0D3EQD2_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0C3R31e-84A0A0E0C3R3_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0FND01e-84A0A0E0FND0_ORYNI; Uncharacterized protein
TrEMBLM8BTJ71e-85M8BTJ7_AEGTA; Zinc finger protein MAGPIE
STRINGEMT283402e-86(Aegilops tauschii)
STRINGOGLUM01G23770.12e-85(Oryza glumipatula)
STRINGORUFI01G22710.12e-85(Oryza rufipogon)
STRINGOS01T0572300-012e-85(Oryza sativa)
STRINGONIVA01G22710.12e-85(Oryza nivara)
STRINGOBART01G20150.16e-86(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.19e-67indeterminate(ID)-domain 4
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]