PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN539818.1_FGP006

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C3H

Protein Properties

Length: 876aa MW: 96035.9 Da PI: 5.3546

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN539818.1_FGP006	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	30.7	5.2e-10	614	635	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f+++G C +Gd+CkF+H+ KN539818.1_FGP006 614 PCHNFMENGMCIRGDKCKFSHV 635 7********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	2.0E-4	3	33	IPR011991	Winged helix-turn-helix DNA-binding domain
PROSITE profile	PS50103	11.676	584	608	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	9.42E-5	585	609	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0019	585	610	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.455	609	637	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0018	612	636	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.28E-6	613	636	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	5.0E-7	614	635	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.7E-4	614	634	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 876 aa Download sequence Send to blast
MQGFRKVTPD RWEFANEAFL AGQKHLLKNI KRRRVSKPLM DSQLRNKTSV VFGQPEAPGE 60 VVSLKRDRAA LRAEVIMLKQ QYNACKSQLI AMEEMVRNIE RRQQQTISFF AKVLTNPVFV 120 QQVLLNYVNK SALRGTAKRQ RLMENEEQHA DSPLNKGMEA ASVMEADVSL GSTGCGTVGK 180 VETTPMCNSQ NIENMCDDVW EELDALPETG MEQEDKAGIG SFDVEEFVGR PCDVGGDRGK 240 NLEVEVALGN HAPHETPSTS ASPDAAVNPT TDPGVVPQGT EEGRVAGVER VEGVEEDVFA 300 GGTSGEADAD GDELGTGAGL MGDDEALRSM QACLDGEDSE LVIEMVGNDD EQLQLDAMMN 360 NLSGLIDDAS ACVMSAQSCG VSGDKLQSDD RVAEEVKELG AGIGNDRSVC SLDHGSLDGG 420 GGFEEGEIEG DTQNLDADDS GNSELQDDVE LEEDFDSGRI EEDGSCGHDV KSNLHLIPQK 480 GNGNTARNML CNSKGDSQMH VARAQAVSYD EVLDWNETPL PDDKALKHGN TRKRTLTEER 540 KAKKTKTKRI KRALQREAEG VKRLKLQPVI KPKVVKVCHF YLHGKCQQPC THYARGSCLK 600 GDDCPYDHEL SKYPCHNFME NGMCIRGDKC KFSHVIPTAE GPSTPDAKKS NVSSVPEKAN 660 CQEQTSRQKI STVYSGEPAT SVPIKHHSIL KNLAGISGNA QKDVVSTEKH KNPTGGPHQN 720 FGRPQPADGK KLGKHNGHRS APLLDEKDSS KQANLHPCSE PKKNSLPTTA AVPSSHTWML 780 FSDEPVPMRL CSIFCIPHTS FIAVTSSCKL QLLMWTYFAE LGANIYCQIL KIGNYQMNAL 840 LFNPQVLSMF LNKDLNWKVG VYLFVWDYEN AKRHMT

Sequence ? help Back to Top

Protein Sequence Length: 876 aa Download sequence Send to blast

MQGFRKVTPD RWEFANEAFL AGQKHLLKNI KRRRVSKPLM DSQLRNKTSV VFGQPEAPGE  60
VVSLKRDRAA LRAEVIMLKQ QYNACKSQLI AMEEMVRNIE RRQQQTISFF AKVLTNPVFV  120
QQVLLNYVNK SALRGTAKRQ RLMENEEQHA DSPLNKGMEA ASVMEADVSL GSTGCGTVGK  180
VETTPMCNSQ NIENMCDDVW EELDALPETG MEQEDKAGIG SFDVEEFVGR PCDVGGDRGK  240
NLEVEVALGN HAPHETPSTS ASPDAAVNPT TDPGVVPQGT EEGRVAGVER VEGVEEDVFA  300
GGTSGEADAD GDELGTGAGL MGDDEALRSM QACLDGEDSE LVIEMVGNDD EQLQLDAMMN  360
NLSGLIDDAS ACVMSAQSCG VSGDKLQSDD RVAEEVKELG AGIGNDRSVC SLDHGSLDGG  420
GGFEEGEIEG DTQNLDADDS GNSELQDDVE LEEDFDSGRI EEDGSCGHDV KSNLHLIPQK  480
GNGNTARNML CNSKGDSQMH VARAQAVSYD EVLDWNETPL PDDKALKHGN TRKRTLTEER  540
KAKKTKTKRI KRALQREAEG VKRLKLQPVI KPKVVKVCHF YLHGKCQQPC THYARGSCLK  600
GDDCPYDHEL SKYPCHNFME NGMCIRGDKC KFSHVIPTAE GPSTPDAKKS NVSSVPEKAN  660
CQEQTSRQKI STVYSGEPAT SVPIKHHSIL KNLAGISGNA QKDVVSTEKH KNPTGGPHQN  720
FGRPQPADGK KLGKHNGHRS APLLDEKDSS KQANLHPCSE PKKNSLPTTA AVPSSHTWML  780
FSDEPVPMRL CSIFCIPHTS FIAVTSSCKL QLLMWTYFAE LGANIYCQIL KIGNYQMNAL  840
LFNPQVLSMF LNKDLNWKVG VYLFVWDYEN AKRHMT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	26	32	LKNIKRR
2	30	34	KRRRV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN539818.1_FGP006

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003308	0.0	AP003308.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1129G05.
GenBank	AP014957	0.0	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBank	CP012609	0.0	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015622402.1	0.0	zinc finger CCCH domain-containing protein 7
Refseq	XP_015622403.1	0.0	zinc finger CCCH domain-containing protein 7
Swissprot	Q657B3	0.0	C3H7_ORYSJ; Zinc finger CCCH domain-containing protein 7
TrEMBL	A0A0D3EQD0	0.0	A0A0D3EQD0_9ORYZ; Uncharacterized protein
STRING	OBART01G20140.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8838	37	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26150.1	2e-34	heat shock transcription factor A2

Publications ? help Back to Top
Noller B,Fischer I Photodissociation dynamics of the 2-propyl radical, C3H7. J Chem Phys, 2007. 126(14): p. 144302 [PMID:17444707] Ali MA,Dillstrom VT,Lai JY,Violi A Ab initio investigation of the thermal decomposition of n-butylcyclohexane. J Phys Chem A, 2014. 118(6): p. 1067-76 [PMID:24344976]