PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539819.1_FGP007
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 201aa    MW: 22285.6 Da    PI: 10.5523
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539819.1_FGP007genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.95.7e-112064554
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                       h+e+ErrRR+riN  + +Lr+++P       k ++Ka+ L ++v+ +k+L
  KN539819.1_FGP007 20 HSEAERRRRERINAHLTTLRRMIPDT-----KQMDKATLLARVVDQVKDL 64
                       9************************9.....67***********999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-13673IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.7611564IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-131974IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.5E-92064IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-112170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2601.3E-5104166No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MSSSSGSGRS ATEARALKIH SEAERRRRER INAHLTTLRR MIPDTKQMDK ATLLARVVDQ  60
VKDLKRKASE ITQRTPLPPE TNEVSIECFT GDAGNHKTLY IKASISCDDR PDLIAGITHA  120
FHGLRLRTVR AEMTSLGGRV QHVFILCREE GIAGGVSLKS LKEAVRQALA KVASPELVYG  180
SSHFQSKRQR ILESHCSIMS I
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12328ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539819.1_FGP007
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1062921e-178AK106292.1 Oryza sativa Japonica Group cDNA clone:002-101-B04, full insert sequence.
GenBankAP0025211e-178AP002521.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0041E11.
GenBankAP0025391e-178AP002539.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0433F09.
GenBankAP0149571e-178AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126091e-178CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623162.11e-128putative transcription factor bHLH107
TrEMBLA0A0D9Y3K31e-128A0A0D9Y3K3_9ORYZ; Uncharacterized protein
STRINGOGLUM01G04250.11e-129(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33473678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.11e-30bHLH family protein