PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539820.1_FGP007
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 1106aa    MW: 123708 Da    PI: 7.8863
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539820.1_FGP007genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.11.7e-11758810855
                AP2   8 wdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        +++++gr++A+++d  s+n    k+ k+++lg ++ +e Aa+a++ a++k++g
  KN539820.1_FGP007 758 RHRWTGRFEAHLWDkNSWNPtqrKKgKQVYLGAYDEEEAAARAYDLAALKYWG 810
                        799***********888855666447*************************98 PP
2AP237.36.8e-12873917855
                AP2   8 wdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        +++++grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  KN539820.1_FGP007 873 RHHQNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYKG 917
                        68889******99966...3.6***********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF144133.7E-3130118IPR025845Thg1 C-terminal domain
SuperFamilySSF537201.44E-44156547IPR016161Aldehyde/histidinol dehydrogenase
Gene3DG3DSA:3.40.605.102.9E-56156428IPR016162Aldehyde dehydrogenase N-terminal domain
PfamPF001713.8E-31170546IPR015590Aldehyde dehydrogenase domain
PROSITE patternPS000700428439IPR016160Aldehyde dehydrogenase, cysteine active site
Gene3DG3DSA:3.40.309.109.9E-6429547IPR016163Aldehyde dehydrogenase, C-terminal
PROSITE profilePS5103217.24746818IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-13753819IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-13757819IPR016177DNA-binding domain
SMARTSM003805.7E-18758824IPR001471AP2/ERF domain
PfamPF008473.5E-8758810IPR001471AP2/ERF domain
PROSITE profilePS5103215.527866925IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.7E-14873925IPR001471AP2/ERF domain
CDDcd000182.06E-20873925No hitNo description
SMARTSM003806.6E-21873931IPR001471AP2/ERF domain
PfamPF008473.5E-7873917IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-14873926IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0010133Biological Processproline catabolic process to glutamate
GO:0055114Biological Processoxidation-reduction process
GO:0072593Biological Processreactive oxygen species metabolic process
GO:0005739Cellular Componentmitochondrion
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003842Molecular Function1-pyrroline-5-carboxylate dehydrogenase activity
GO:0008270Molecular Functionzinc ion binding
GO:0016620Molecular Functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
GO:0050897Molecular Functioncobalt ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1106 aa     Download sequence    Send to blast
MKWKEFFPNK DLAEQPYFEA ELLCYPKQKI ICDYLSSRQA ECHTSNQYNT CFWMLVKSGK  60
REHEAHEILK GTLSKDRNEL LFQKFHLNYN NELAMFRKGS CTYRHKVQNL RMQRVEKIPE  120
ENGGRWLHTP PFATVSPQEI SGSSPAEVQN FGLSSVQGSW TTSGNWNWLV DPLNGEKFIK  180
VAEVQEAEIK PFVESLSNCP KHGLHNPLKA PERYLMYGDI SAKAANMLGQ PVVSDFFAKL  240
IQRVSPKSYQ QALAEVQVSQ KFLENFCGDQ VRFLARSFAV PGNHLGQSSN GYRWPYGPVA  300
IITPFNFPLE IPLLQLMGAL YMGNKPVLKV DSKVSIVMDQ MLRLLHACGM PAEDVDFINS  360
DGITMNKLLL EANPKMTLFT GSSRIAEKLA ADLKGKIKLE DAGFDWKILG PDVQEVDYIA  420
WVCDQDAYAC SGQKCSAQSI LFMHKNWSSS GLLDKMKSLS ERRKLEDLTI GPVLTVTTSS  480
MIEHVKNLLK IPGSKVLFGG EPLENHSIPE IYGAFKPTAV FVPLSEILKS GNFELVTREI  540
FGPFQEVLGR SVNGTTYAGI RARTTGAPQN HWFGPAGDPR GAGIGTPEAI KLVCHPNFNG  600
SNWISIPVRD TNSGEPRQNE NSVHGALRLQ MRPLYDTAKY AHNKQVTNSV ASQCNQYINT  660
LAGSSPAMII NAPEGGAEAG PVVRRRRREP SLLAPISGDT NGGGIGKTSL SGITVKRSSR  720
FRGVSQVKEV KHIYTEKFLC LVTDSELVGM TRRYLSCRHR WTGRFEAHLW DKNSWNPTQR  780
KKGKQVYLGA YDEEEAAARA YDLAALKYWG PTTYTNFPVM DYEKELKIME NLTKEEYLAS  840
LRRESFSLLF CYHLFNFDKH LNRCQEEQWL LKRHHQNGRW EARIGRVFGN KYLYLGTYST  900
QEEAARAYDI AAIEYKGVNA VTNFDLRSYI TWLKPTPAHV AMNPAEALAM QIPVDHFLPM  960
ETQMMMLPQS NPFTSYHNAQ SLGGGDGGSS SSNNQEASMI ISPSGSSRKR SSSTALSLLL  1020
KSSMFRQLVE KNSDAGEENG GEMREPGAHP GEGYEYHNFF QGDAAPDMDM CDLLSSGNVH  1080
AATGSAGFEE DIACYSGFGS MQSLQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6d97_A0.012559522527Aldehyde dehydrogenase 12
6d97_B0.012559522527Aldehyde dehydrogenase 12
6d97_C0.012559522527Aldehyde dehydrogenase 12
6d97_D0.012559522527Aldehyde dehydrogenase 12
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1776784PTQRKKGKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539820.1_FGP007
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1217650.0AK121765.1 Oryza sativa Japonica Group cDNA clone:J033091O16, full insert sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.34e-55AP2 family protein