PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN539839.1_FGP003

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 88aa MW: 10776.4 Da PI: 10.639

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN539839.1_FGP003	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	49.3	1e-15	2	53	5	56
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 +r++r++kNRe+A rsR+RK+a+i+eLe v+eLe+e +L e ee +++ KN539839.1_FGP003 2 QRQKRMIKNRESAARSRERKQAYIAELEAQVAELEEEHAQLLREQEEKNQKR 53 79**************************************998877665554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50217	10.978	1	48	IPR004827	Basic-leucine zipper domain
SMART	SM00338	7.2E-9	1	67	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.7E-13	2	52	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	5.3E-14	3	50	No hit	No description
SuperFamily	SSF57959	6.88E-12	3	49	No hit	No description
PROSITE pattern	PS00036	0	5	20	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 88 aa Download sequence Send to blast
MQRQKRMIKN RESAARSRER KQAYIAELEA QVAELEEEHA QLLREQEEKN QKRLKEKWHV 60 FMQIKEQAVA VVIRKKTQDL RRTNSMEW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the ABA-responsive elements (ABREs) in vitro. Involved in abiotic stress responses and abscisic acid (ABA) signaling (PubMed:20039193). Involved in the signaling pathway that induces growth inhibition in response to D-allose (PubMed:23397192). {ECO:0000269\|PubMed:20039193, ECO:0000269\|PubMed:23397192}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN539839.1_FGP003

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by anoxia, drought, salt stress, oxidative stress, cold and abscisic acid (ABA) (PubMed:20039193). Induced by D-allose (PubMed:23397192). {ECO:0000269\|PubMed:20039193, ECO:0000269\|PubMed:23397192}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT834109	2e-84	CT834109.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA060C07, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015639395.1	2e-44	bZIP transcription factor 12-like
Swissprot	Q0JHF1	7e-32	BZP12_ORYSJ; bZIP transcription factor 12
TrEMBL	A0A0E0HF20	2e-56	A0A0E0HF20_ORYNI; Uncharacterized protein
STRING	ONIVA05G18780.2	3e-57	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2665	37	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03970.1	1e-10	G-box binding factor 4

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]