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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | KN539852.1_FGP007 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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| Family | FAR1 | ||||||||
| Protein Properties | Length: 364aa MW: 40043.2 Da PI: 10.3412 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 71.2 | 2.4e-22 | 11 | 109 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.........tekerrtraetrtgCkaklkvkkek.dgkwevtkle 82
+fY++YA ++GF vrks+++k++r++ +t+r fvCsk+g+r+e kk +++ + + +rtgC a+l++k+ + ++vt++
KN539852.1_FGP007 11 EFYKAYAARLGFVVRKSNKSKNSRHT-VTRRLFVCSKQGFRQEPKKPpqdeaaaaaSSSPPPRCPDSRTGCLASLTIKLLPsANAFRVTDFA 101
6*****************99997666.****************99998888776654444558899*************99899******** PP
FAR1 83 leHnHela 90
eHnH+la
KN539852.1_FGP007 102 AEHNHPLA 109
******97 PP
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| 2 | FAR1 | 73.1 | 6.2e-23 | 157 | 256 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgkwevtk 80
fYn+YA++vGFsvr+s++k++ g i++r fvCs+eg +++ k++ + + r + trtgC+a++++k + +++v+k
KN539852.1_FGP007 157 FYNRYAEHVGFSVRRSYKKRK--RGVIVSRIFVCSREGVSDRAKHEsiaivsnnastgpSGTPRPGPPPTRTGCQARMVIKITPCRTYRVAK 246
**************9976665..999**************9999999****999998877777778899*********************** PP
FAR1 81 leleHnHela 90
++ eHnH+la
KN539852.1_FGP007 247 FVPEHNHPLA 256
********97 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03101 | 1.3E-19 | 11 | 109 | IPR004330 | FAR1 DNA binding domain |
| Pfam | PF03101 | 1.0E-19 | 157 | 256 | IPR004330 | FAR1 DNA binding domain |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 364 aa Download sequence Send to blast |
MYFETEEDAY EFYKAYAARL GFVVRKSNKS KNSRHTVTRR LFVCSKQGFR QEPKKPPQDE 60 AAAAASSSPP PRCPDSRTGC LASLTIKLLP SANAFRVTDF AAEHNHPLAS AAPAVSLALL 120 PPSSSHHTIA AVASLPDPRD GLRTDMHFET EDDAYAFYNR YAEHVGFSVR RSYKKRKRGV 180 IVSRIFVCSR EGVSDRAKHE SIAIVSNNAS TGPSGTPRPG PPPTRTGCQA RMVIKITPCR 240 TYRVAKFVPE HNHPLANPDS VHKLRSHKMR ARAHELGAGE LHRRKHGKGY PDIGNHVVAS 300 SSQPISFVGN QLPDHTSQAR GVPQTTNGLT SLWGISTVDE FVKSSRQLGL TSGFFVVSQM 360 QEYG |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | KN539852.1_FGP007 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AK119387 | 0.0 | AK119387.1 Oryza sativa Japonica Group cDNA clone:001-132-C03, full insert sequence. | |||
| GenBank | AP003956 | 0.0 | AP003956.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1457_D07. | |||
| GenBank | AP004259 | 0.0 | AP004259.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0005E02. | |||
| GenBank | AP014963 | 0.0 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_015647573.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 | ||||
| TrEMBL | I1QAU3 | 0.0 | I1QAU3_ORYGL; Uncharacterized protein | ||||
| STRING | ORGLA07G0123500.1 | 0.0 | (Oryza glaberrima) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP18 | 32 | 967 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G38180.1 | 1e-13 | FAR1-related sequence 5 | ||||




