PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539878.1_FGP008
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 395aa    MW: 43134.7 Da    PI: 6.7469
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539878.1_FGP008genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH413.4e-13641041055
                        HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +rRR++iN+++  L++l+P++      K +Ka++L +A+eY+k+Lq
  KN539878.1_FGP008  64 QRRRSKINEKMKALQSLIPNS-----NKTDKASMLDEAIEYLKQLQ 104
                        8*******************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.2554103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-1358109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-1663114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.02E-1264108No hitNo description
Gene3DG3DSA:4.10.280.103.4E-1664114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-1064104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF133591.2E-11216339IPR027806Harbinger transposase-derived nuclease domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MDEQRGRGGF DELVLLHQQQ ERRRREQQQQ EEEEEEEVRR QMFGAVVGGL AAFPAAAAAL  60
GQQQRRRSKI NEKMKALQSL IPNSNKTDKA SMLDEAIEYL KQLQLQVQML SMRNGVYLNP  120
SYLSGALEPA QASQMFAALG GNNVTVAHPG TVMPPVNQSS GAHHLFDPLN SPPQNQPQSL  180
ILPSVPSTAI PEPPFHLESS QSHLRQFQLP GSSELVAGAS SRVLSLAAGF RGDRTDLEVL  240
KLSSLYQELE QGKVLDHGQY LAGDGDGYPL LPWLMVPFPG PPVPGSPEAE FNAAHDAMCR  300
KARRTVRSLK GWGAIARLRD EESPRAAVAC IGTCAMLHNV LLAREDHSAL ASEESDLPAA  360
AQRRADDGAA GVEDLEIHRR ASAFRGALAA KMRRR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12025ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539878.1_FGP008
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0025360.0AP002536.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0015I14.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1505522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.15e-30bHLH family protein