PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539882.1_FGP003
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 613aa    MW: 69522.6 Da    PI: 10.0089
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539882.1_FGP003genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR128.26.3e-091476248
               FAR1  2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk................t 48
                       fY  Y++++GF+ r+ ++++s  ng +++++f Cs+  ++++++k+                 
  KN539882.1_FGP003 14 FYYGYGERMGFKARTGSNRRSVGNGVMIMQRFLCSRGNYANRRNKAngldelkeeevqdgaaG 76
                       9***********************************999999988877777765555555441 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.2E-61477IPR004330FAR1 DNA binding domain
PROSITE profilePS509668.036321352IPR007527Zinc finger, SWIM-type
PfamPF044347.3E-5330350IPR007527Zinc finger, SWIM-type
SMARTSM005751.4E-5330354IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 613 aa     Download sequence    Send to blast
MGMEFDSVHA AKGFYYGYGE RMGFKARTGS NRRSVGNGVM IMQRFLCSRG NYANRRNKAN  60
GLDELKEEEV QDGAAGKRKR GANNKARNRN PVKNNSEVIE VESSAEKGAG TAVPNNGQEA  120
RKMRGSKRGR TKKDVTEKDE KPVVELEAGK EDEVVAQDGD DVEEQKGEGE EEMEEEVQVE  180
VQEKRGRGRP RKADAEGNAL QARVLRELGL RASQYTNEER KKIVSKYLSK RQSRPVSARP  240
AKIASRQALA ERRKRGDGGR FLASEGLTQP SERRSKRLEK QNLKKEDKNK RLAEQQADYL  300
GVQMAQSVAP LRMLWQAANA YTPTLFEMFS CKKFEFTGIP CCHVLKVLEV RNIKELPPHY  360
ILKRWRKDAQ SESPRENYGF EAVDEDPRFL LSKRYSMLYR TFYKIAAKAA ENIEAYTYME  420
SQCDQFIEQV ELLLQAKLHD KSSLSTILKV QQPNLLPNEA SNSEPRRVSS KKIKNVEMRR  480
QQQSPFQSNK KKKGRQGLPE PEEAEVPLRV DPPTISNDIP NHLRTPTSQF LAPSHIMQAP  540
YVAQQFGLSS LQGFPGISPF GQLQEPAPAP LQQPHLQQPP FHSGPQIPQV IVITYTHVPF  600
PRDFTFTDSI SNY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183191KRGRGRPRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539882.1_FGP003
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1204600.0AK120460.1 Oryza sativa Japonica Group cDNA clone:J013106N05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630920.10.0protein FAR1-RELATED SEQUENCE 4 isoform X1
TrEMBLQ10DB40.0Q10DB4_ORYSJ; Os03g0777700 protein
STRINGOMERI03G32600.10.0(Oryza meridionalis)
STRINGOS03T0777700-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP148331318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-12FAR1-related sequence 5