PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN539882.1_FGP006

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 229aa MW: 25966.4 Da PI: 8.4224

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN539882.1_FGP006	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	128.2	6.3e-40	39	152	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 pGfrFhPtdeel+++yL++kv++k+l++ e+ike+diyk++PwdLp +++ ++ekewyfF+ r +ky+++ r+nr+t sg + KN539882.1_FGP006 39 LPGFRFHPTDEELITFYLRRKVARKSLSI-EIIKEMDIYKHDPWDLPkASTVGGEKEWYFFCLRGRKYRNSIRPNRVTGSG------N---- 119 69*************************.89***********445556889****************98865......2.... PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +ge +glkk+Lv+y+g+a kg+ktdW+mhe+rl KN539882.1_FGP006 120 ---SGESIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 152 ...5778*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.5E-45	37	157	IPR003441	NAC domain
PROSITE profile	PS51005	33.046	38	176	IPR003441	NAC domain
Pfam	PF02365	5.4E-21	40	152	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MVTSKEFARD QAAMDQKIKS DVGEVVLAGD EEEDGDVVLP GFRFHPTDEE LITFYLRRKV 60 ARKSLSIEII KEMDIYKHDP WDLPKASTVG GEKEWYFFCL RGRKYRNSIR PNRVTGSGNS 120 GESIGLKKSL VYYRGSAGKG TKTDWMMHEF RLPPAIAAAD ASPCMQEAVY IGNYCQWLNK 180 SWLRRIAVTL VTYSRINSKH PRGDQLDYYQ AGVQDNHGSG QPEFVASLT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-40	40	152	19	142	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-40	40	152	19	142	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-40	40	152	19	142	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-40	40	152	19	142	NO APICAL MERISTEM PROTEIN
3swm_A	7e-40	40	152	22	145	NAC domain-containing protein 19
3swm_B	7e-40	40	152	22	145	NAC domain-containing protein 19
3swm_C	7e-40	40	152	22	145	NAC domain-containing protein 19
3swm_D	7e-40	40	152	22	145	NAC domain-containing protein 19
3swp_A	7e-40	40	152	22	145	NAC domain-containing protein 19
3swp_B	7e-40	40	152	22	145	NAC domain-containing protein 19
3swp_C	7e-40	40	152	22	145	NAC domain-containing protein 19
3swp_D	7e-40	40	152	22	145	NAC domain-containing protein 19
4dul_A	8e-40	40	152	19	142	NAC domain-containing protein 19
4dul_B	8e-40	40	152	19	142	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN539882.1_FGP006

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK073539	0.0	AK073539.1 Oryza sativa Japonica Group cDNA clone:J033041C24, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015628846.1	1e-114	transcription factor JUNGBRUNNEN 1
Swissprot	Q9SK55	4e-64	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	A0A0D3FPQ2	1e-114	A0A0D3FPQ2_9ORYZ; Uncharacterized protein
STRING	OBART03G36060.1	1e-115	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1191	38	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	2e-66	NAC domain containing protein 42

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]