PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539885.1_FGP010
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 160aa    MW: 17985.6 Da    PI: 8.8222
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539885.1_FGP010genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B397.11.1e-3035121183
                        EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                        f+kv tpsdv+k++rlv+pk++ae++      ++e++  l++ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD++ ++
  KN539885.1_FGP010  35 FEKVVTPSDVGKLNRLVIPKQHAEKYfpldAASNEKGLLLSFEDRTGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTCCIS 121
                        99****************************55567889**********************************************887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.3E-4028123IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-2932122IPR015300DNA-binding pseudobarrel domain
CDDcd100178.85E-2633120No hitNo description
SMARTSM010196.8E-1935137IPR003340B3 DNA binding domain
PROSITE profilePS5086312.98535138IPR003340B3 DNA binding domain
PfamPF023628.9E-2835121IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MEFTPISPPT RVAGGEEDSE RGAAAWAVVE KEHMFEKVVT PSDVGKLNRL VIPKQHAEKY  60
FPLDAASNEK GLLLSFEDRT GKPWRFRYSY WNSSQSYVMT KGWSRFVKEK RLDAGDTCCI  120
SCSDPLLSPL LLAAYAAQPS VIRVRFFRNH AGSILQLISS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-53281411116B3 domain-containing transcription factor NGA1
5os9_B2e-53281411116B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539885.1_FGP010
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2104911e-135AC210491.1 Oryza glaberrima clone OG_BBa0088K23, complete sequence.
GenBankCP0126111e-135CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613852.12e-70putative B3 domain-containing protein Os10g0537100
SwissprotQ8LNN82e-71Y1071_ORYSJ; Putative B3 domain-containing protein Os10g0537100
TrEMBLA0A0D3HG222e-68A0A0D3HG22_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0IVJ01e-68A0A0E0IVJ0_ORYNI; Uncharacterized protein
TrEMBLA0A0E0R1U81e-68A0A0E0R1U8_ORYRU; Uncharacterized protein
TrEMBLA2Z9R31e-68A2Z9R3_ORYSI; Uncharacterized protein
TrEMBLI1QVG42e-68I1QVG4_ORYGL; Uncharacterized protein
STRINGOS10T0537100-009e-70(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.14e-54B3 family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]