PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN539916.1_FGP002

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Protein Properties

Length: 209aa MW: 23627.5 Da PI: 7.4276

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN539916.1_FGP002	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	88.5	5.6e-28	36	121	1	81
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 f+k ltpsdv+k++rlv+pk++ae++ g + e++ l++edesg+ W+++++y+ +s++yvltkGW+++vk+++L++gD+ v KN539916.1_FGP002 36 FEKPLTPSDVGKLNRLVIPKQHAERYfplggGDSGEKGLLLSFEDESGKPWRFRYSYWTSSQSYVLTKGWSRYVKEKRLDAGDVQV 121 99**************************9555568889*****************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	5.7E-36	31	119	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.57E-27	33	119	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.65E-26	35	119	No hit	No description
SMART	SM01019	2.2E-15	36	131	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.435	36	147	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.4E-24	36	120	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0080167	Biological Process	response to karrikin
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MAMHPLAQGH PQAWPWGVAM YTNLHYHHHY EREHLFEKPL TPSDVGKLNR LVIPKQHAER 60 YFPLGGGDSG EKGLLLSFED ESGKPWRFRY SYWTSSQSYV LTKGWSRYVK EKRLDAGDVQ 120 VSKDHIPFAV EQFAGESQRD ADAKSSSAAS APPPSRRLRL FGVNLDCGPE PEADQATAMY 180 GYMHHQSPYA AVSAVPNYWS VFFSLLTAI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	1e-45	31	141	3	104	B3 domain-containing transcription factor NGA1
5os9_B	1e-45	31	141	3	104	B3 domain-containing transcription factor NGA1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN539916.1_FGP002

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL928758	0.0	AL928758.3 Oryza sativa chromosome 12, . BAC OSJNBb0075N21 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBank	AP014968	0.0	AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBank	CP012620	0.0	CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020185469.1	2e-77	B3 domain-containing protein Os11g0156000-like
Swissprot	Q53QI0	6e-62	Y1160_ORYSJ; B3 domain-containing protein Os11g0156000
TrEMBL	A0A0A9DVJ9	2e-84	A0A0A9DVJ9_ARUDO; Uncharacterized protein
STRING	EMT23005	3e-77	(Aegilops tauschii)
STRING	Traes_5BL_B98E347A8.1	7e-77	(Triticum aestivum)
STRING	Traes_5DL_CACDF70D6.1	6e-77	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2446	38	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36080.1	2e-48	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]