PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539924.1_FGP002
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 408aa    MW: 44831.5 Da    PI: 8.5027
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539924.1_FGP002genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.63.3e-112347327
                       S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                       ++ C++++rtG C++G +CkF+H+p
  KN539924.1_FGP002 23 EPDCSYYMRTGLCRFGMTCKFNHPP 47
                       789********************97 PP
2zf-CCCH36.95.9e-126892327
                       S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                       +++C+++++tG Ck+G++CkF+H++
  KN539924.1_FGP002 68 QPECQYYLKTGMCKFGATCKFHHPR 92
                       799********************96 PP
3zf-CCCH31.23.8e-10114138327
                        S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                        +++C +++rtG+Ck+ ++CkF+H++
  KN539924.1_FGP002 114 EKECAYYLRTGQCKFASTCKFHHPQ 138
                        679********************97 PP
4zf-CCCH39.78.2e-13274299227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        ++++C+f+++tG Ck+G+ CkF+H++
  KN539924.1_FGP002 274 DQPECQFYMKTGDCKFGAVCKFHHPK 299
                        689*********************96 PP
5zf-CCCH37.73.5e-12319345127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        ++++ C f++r+G+Ck+G++CkF H++
  KN539924.1_FGP002 319 PGEPVCTFYSRYGICKFGPNCKFDHPM 345
                        5789*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.8E-52047IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.2812048IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-82347IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-52448IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.8E-42646IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-56592IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.0946593IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-66794IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-86892IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.9E-57193IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-6110139IPR000571Zinc finger, CCCH-type
SMARTSM003564.9E-4111138IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.324111139IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-7114138IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-5272299IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.511272300IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-9274299IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.55E-6275302IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.0E-5278300IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-7318345IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.99318346IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-9320345IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-6322347IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-4323343IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MWQMTLGGGE SMESTPYPER IGEPDCSYYM RTGLCRFGMT CKFNHPPNRK LAVAAARMNG  60
EYPYRVGQPE CQYYLKTGMC KFGATCKFHH PREKAALANR VQLNVLGYPM RPNEKECAYY  120
LRTGQCKFAS TCKFHHPQPS NTMVAVRNSM YSPGQSATSP GQHTYPGAVT NWTLSRSASF  180
IASPRWAGHS GYAQVIVPQG LVQVPGWNPY AAQMGSSSPD DQQRTPVTTQ YYGSRQSETG  240
GMGDHGMYQS YQGGSVPVGV YTVQGENIFP ERPDQPECQF YMKTGDCKFG AVCKFHHPKE  300
RLVPAPNCAL NSLGLPLRPG EPVCTFYSRY GICKFGPNCK FDHPMGTLMY GSATSPTGDV  360
SSMHYQLSPS PGHPGILLDG GSGRSHRVPQ SDSQQIPSGD GNVEREAS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539924.1_FGP002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1115110.0AK111511.1 Oryza sativa Japonica Group cDNA clone:J013001J05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620174.10.0zinc finger CCCH domain-containing protein 66 isoform X1
SwissprotQ2QT650.0C3H66_ORYSJ; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A0E0FBH80.0A0A0E0FBH8_9ORYZ; Uncharacterized protein
STRINGOMERI12G06510.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-153zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]