PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539937.1_FGP005
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 163aa    MW: 18261.3 Da    PI: 6.295
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539937.1_FGP005genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM50.56.9e-16198651128
                NAM  51 vkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        + ++ ++wyfFs++ +        +r+  +g Wk     ++v+s +g +vglkktL+f+ g+  ++ kt+Wvmhey+l
  KN539937.1_FGP005  19 ALQSGNQWYFFSHATQ--------TRTSPNGHWKPIAD-ETVIS-GGCNVGLKKTLIFFIGEPFEAIKTNWVMHEYHL 86 
                        344678******9754........577889****9976.66667.7999****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100523.5931128IPR003441NAC domain
SuperFamilySSF1019419.02E-2316127IPR003441NAC domain
PfamPF023656.4E-112486IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MGIECHSRAL MSNLFTGKAL QSGNQWYFFS HATQTRTSPN GHWKPIADET VISGGCNVGL  60
KKTLIFFIGE PFEAIKTNWV MHEYHLMDGS INCGSSSTSS SSSKRSHKKK GHSDTESKNW  120
VICRVFESSY DSQVSFHEEG TELSCLDEVF LSLDDYDEVS FAK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-161413361170NO APICAL MERISTEM PROTEIN
1ut4_B7e-161413361170NO APICAL MERISTEM PROTEIN
1ut7_A7e-161413361170NO APICAL MERISTEM PROTEIN
1ut7_B7e-161413361170NO APICAL MERISTEM PROTEIN
3swm_A7e-161413364173NAC domain-containing protein 19
3swm_B7e-161413364173NAC domain-containing protein 19
3swm_C7e-161413364173NAC domain-containing protein 19
3swm_D7e-161413364173NAC domain-containing protein 19
3swp_A7e-161413364173NAC domain-containing protein 19
3swp_B7e-161413364173NAC domain-containing protein 19
3swp_C7e-161413364173NAC domain-containing protein 19
3swp_D7e-161413364173NAC domain-containing protein 19
4dul_A7e-161413361170NAC domain-containing protein 19
4dul_B7e-161413361170NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539937.1_FGP005
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2435850.0AK243585.1 Oryza sativa Japonica Group cDNA, clone: J100082O14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634043.11e-104NAC domain-containing protein 104
TrEMBLA0A0D9ZL291e-102A0A0D9ZL29_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0DEJ71e-102A0A0E0DEJ7_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0P9G51e-102A0A0E0P9G5_ORYRU; Uncharacterized protein
TrEMBLQ7XV601e-102Q7XV60_ORYSJ; OSJNBa0006B20.9 protein
STRINGOGLUM04G13190.11e-103(Oryza glumipatula)
STRINGOMERI04G10960.11e-103(Oryza meridionalis)
STRINGORUFI04G14570.11e-103(Oryza rufipogon)
STRINGOS04T0437000-011e-103(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36673679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.13e-28xylem NAC domain 1