PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539944.1_FGP005
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 160aa    MW: 18036.2 Da    PI: 10.7283
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539944.1_FGP005genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_142.71.2e-1349102962
                        CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   9 rkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                        r+ +NR++A+  R+RKka++  Le kvk Le++N++L ++ ++l++e + l++ 
  KN539944.1_FGP005  49 RLLRNRVSAQQARERKKAYLNDLEVKVKDLEKKNSELEERFSTLQNENQMLRQI 102
                        999**********************************************99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.0E-1141105IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.75E-1348103No hitNo description
Gene3DG3DSA:1.20.5.1701.3E-1648105No hitNo description
PROSITE profilePS5021711.41548106IPR004827Basic-leucine zipper domain
PfamPF001708.5E-1249103IPR004827Basic-leucine zipper domain
PROSITE patternPS0003604963IPR004827Basic-leucine zipper domain
CDDcd147042.57E-144997No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MLHASSKDER RGQSGEAEAE ASGGVHANPS SPARMQEQAT SSRPSSSERL LRNRVSAQQA  60
RERKKAYLND LEVKVKDLEK KNSELEERFS TLQNENQMLR QILKNTTKGS IMHNQKVMLL  120
ARKIAIKAPN NKEINLQEQQ QANGQAMDRR NQAPPVSFTN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2oqq_A2e-1466105342Transcription factor HY5
2oqq_B2e-1466105342Transcription factor HY5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539944.1_FGP005
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8337681e-93CT833768.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA034A06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623711.19e-33transcription factor HY5
TrEMBLA0A218XR051e-31A0A218XR05_PUNGR; Uncharacterized protein
TrEMBLA0A2I0IT231e-31A0A2I0IT23_PUNGR; Uncharacterized protein
STRINGOS02T0203000-004e-32(Oryza sativa)
STRINGOB02G17160.13e-32(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140838111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11260.13e-25bZIP family protein