PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539946.1_FGP002
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 184aa    MW: 20816.1 Da    PI: 10.3739
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539946.1_FGP002genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.76.3e-13842741
                       HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
             SRF-TF  7 snrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                         r vt+ +Rr+g++KK  ELS+LC ++++++++ 
  KN539946.1_FGP002  8 AARRVTLRRRRAGLIKKVTELSILCSVQASIVVYN 42
                       4689****************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.001154IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.386142IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-15389IPR002100Transcription factor, MADS-box
PfamPF003191.0E-12749IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MARHTKNAAR RVTLRRRRAG LIKKVTELSI LCSVQASIVV YNIDEAGDPV VWPSIEEAKN  60
MWSKLMDMSE ATQKKWMQDS KTLLQQQIMK LQKKLDNLKA ENYKREITNI ISEIGGGHRK  120
NLNDLSPEMV KNVKQEAAKL REAIRNRIIE LHAQGASSSV VVAPQVEIVA PHASQFDLNE  180
HALV
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539946.1_FGP002
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA2ZCU41e-128A2ZCU4_ORYSI; Uncharacterized protein
STRINGOPUNC11G07320.11e-100(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1651545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40210.16e-10AGAMOUS-like 48