PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539974.1_FGP005
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 495aa    MW: 54828.7 Da    PI: 4.9192
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539974.1_FGP005genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like826.8e-26105158155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        k+r++W+ +LH++Fv+av+q+ G +k  Pk+il+lm+v+gLt+e+v+SHLQkYRl
  KN539974.1_FGP005 105 KARVVWSVDLHQKFVNAVNQI-GFDKVGPKKILDLMNVPGLTRENVASHLQKYRL 158
                        68*******************.9*******************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23003.7E-10160No hitNo description
PIRSFPIRSF0363924.0E-1191488IPR017053Response regulator B-type, plant
PROSITE profilePS5011014139IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521726.83E-6546IPR011006CheY-like superfamily
SuperFamilySSF466892.78E-18102162IPR009057Homeodomain-like
PROSITE profilePS512949.161102161IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-28104163IPR009057Homeodomain-like
TIGRFAMsTIGR015578.1E-23105158IPR006447Myb domain, plants
PfamPF002497.4E-8107157IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MSIDGETSRV MKGVQHGACD YLLKPVRMKE LRNIWQHVYR KKMHEVKEIE GNDSCDDLQI  60
LRNGFEGLDE KSLFMRSDSD TMRKRKDVDK DHADQESSDG NTVKKARVVW SVDLHQKFVN  120
AVNQIGFDKV GPKKILDLMN VPGLTRENVA SHLQKYRLYL SRLQKQNEER ILGAARQDFS  180
HKGTSENLNL RSSFQEQPSN IANGYPHASQ NIQTQANMLD SQLEDTKSTV PLPVPDKKRT  240
LASDAADSQN LTSASSLGGV LSFKSMPVNQ DRKPSETMIL ECQAWTGGIP SKQFMQYPKH  300
NHERCDLLGD YSCLPKPDLE HPVGPSNLYA PPPLISMSCG MEGDARDFSD VKPAIMDCIK  360
SLSPALTCTV DSVSVQLSDS VVTSIDGDLK SSGVDGLPSI KDCCLDQTNS QGSLRPSQEP  420
SIIGSTELAS LPEDLPSYPL HGVSLENIGL SSIDLLNYSD AMILSGLQSN WYDDLEFSSE  480
MMDYPSIDEC LFASS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A8e-18104163463ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539974.1_FGP005
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0622500.0AK062250.1 Oryza sativa Japonica Group cDNA clone:001-047-G01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622017.10.0two-component response regulator ORR26 isoform X1
RefseqXP_025878200.10.0two-component response regulator ORR26 isoform X2
SwissprotQ5N6V80.0ORR26_ORYSJ; Two-component response regulator ORR26
TrEMBLA0A0D3EXJ90.0A0A0D3EXJ9_9ORYZ; Two-component response regulator
TrEMBLA0A0E0N6F70.0A0A0E0N6F7_ORYRU; Two-component response regulator
TrEMBLI1NUE70.0I1NUE7_ORYGL; Two-component response regulator
STRINGORUFI01G44260.20.0(Oryza rufipogon)
STRINGOS01T0904700-010.0(Oryza sativa)
STRINGORGLA01G0348700.10.0(Oryza glaberrima)
STRINGOBART01G40940.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59003752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.12e-58response regulator 11
Publications ? help Back to Top
  1. Du L, et al.
    The two-component signal system in rice (Oryza sativa L.): a genome-wide study of cytokinin signal perception and transduction.
    Genomics, 2007. 89(6): p. 697-707
    [PMID:17408920]