PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539975.1_FGP002
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 205aa    MW: 22685.2 Da    PI: 10.159
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539975.1_FGP002genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.85e-271766251
                       ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       rie+ + rqv fskRr g++KKA+ELSvLCda+va+++fs+ g+lye++s
  KN539975.1_FGP002 17 RIEDRTSRQVRFSKRRSGLFKKAYELSVLCDAQVALLVFSPAGRLYEFAS 66
                       8***********************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.235868IPR002100Transcription factor, MADS-box
SMARTSM004323.5E-35867IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-281086IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-281030IPR002100Transcription factor, MADS-box
CDDcd002657.76E-341378No hitNo description
PfamPF003193.7E-261764IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-283045IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-284566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MEGGGRRRKR GKVELRRIED RTSRQVRFSK RRSGLFKKAY ELSVLCDAQV ALLVFSPAGR  60
LYEFASSASS IDTIFGRYWD LLDTTIDLNI EARDSRVDCN IQVWIRRQIV HGGLAPLLVG  120
DATPPFRGVG VAPRLALCID DDTPPRIKVA KAGGMEGGIM DVNDGLQEFG LHLMIALVWY  180
FMRQGSLGNK GSISGTTISD IKVSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-1710108391Myocyte-specific enhancer factor 2B
1tqe_Q1e-1710108391Myocyte-specific enhancer factor 2B
1tqe_R1e-1710108391Myocyte-specific enhancer factor 2B
1tqe_S1e-1710108391Myocyte-specific enhancer factor 2B
6c9l_A1e-1710108391Myocyte-specific enhancer factor 2B
6c9l_B1e-1710108391Myocyte-specific enhancer factor 2B
6c9l_C1e-1710108391Myocyte-specific enhancer factor 2B
6c9l_D1e-1710108391Myocyte-specific enhancer factor 2B
6c9l_E1e-1710108391Myocyte-specific enhancer factor 2B
6c9l_F1e-1710108391Myocyte-specific enhancer factor 2B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1512RRRKRGKV
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539975.1_FGP002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2429801e-166AK242980.1 Oryza sativa Japonica Group cDNA, clone: J090094F15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649437.13e-57MADS-box transcription factor 51-like isoform X1
TrEMBLA2YXF61e-131A2YXF6_ORYSI; Uncharacterized protein
TrEMBLQ6YZE51e-131Q6YZE5_ORYSJ; Transcription factor MADS37-like
STRINGORGLA08G0229900.17e-58(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.32e-25MIKC_MADS family protein