PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539990.1_FGP003
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 249aa    MW: 27549.3 Da    PI: 7.2727
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539990.1_FGP003genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM130.99.6e-41211612128
                NAM  12 eelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglk 103
                        +elv +yL+++++g+  ++  +i+e+d ++++PwdLp+++  +++ewyfF++rd+ky++g+r++ra++sgyWkatg dk+vl+ +g++ g+k
  KN539990.1_FGP003   2 SELVAHYLCPRAAGRAAPV-PIIAELDPHRHDPWDLPHRALFGRREWYFFTPRDRKYPNGSRPHRAAASGYWKATGADKPVLH-NGRTAGIK 91 
                        59**************999.88***************87778999**************************************.999***** PP

                NAM 104 ktLvfykgrapkgektdWvmheyrl 128
                        k Lvfy+g+ p+g+kt+W+mheyrl
  KN539990.1_FGP003  92 KALVFYHGKPPRGVKTEWIMHEYRL 116
                        ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100548.081144IPR003441NAC domain
PfamPF023651.2E-182116IPR003441NAC domain
SuperFamilySSF1019416.8E-513144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MSELVAHYLC PRAAGRAAPV PIIAELDPHR HDPWDLPHRA LFGRREWYFF TPRDRKYPNG  60
SRPHRAAASG YWKATGADKP VLHNGRTAGI KKALVFYHGK PPRGVKTEWI MHEYRLAKKG  120
GAAAAAGAGA LRLDDWVLCR LYNKKNEWEK MQSKKDEAAA MAAAQSWGEA RTPESEVVDS  180
DAFPEMDYSL PAASFGDALL PKEEARDDDW LMGMSLDDLQ GLGSLLQADD LSMLAPPPAK  240
AEPLGAPFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-76315027174Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539990.1_FGP003
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses (PubMed:18813954, PubMed:20632034). Induced by dehydration and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0281820.0AB028182.1 Oryza sativa mRNA for OsNAC3 protein, complete cds.
GenBankAK0736670.0AK073667.1 Oryza sativa Japonica Group cDNA clone:J033052E11, full insert sequence.
GenBankAP0045720.0AP004572.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0668C05.
GenBankAP0055160.0AP005516.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBa0066H10.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645028.11e-155NAC domain-containing protein 67
SwissprotQ7EZT11e-156NAC67_ORYSJ; NAC domain-containing protein 67
TrEMBLA0A0E0Q5Q81e-154A0A0E0Q5Q8_ORYRU; Uncharacterized protein
TrEMBLA2YJK01e-154A2YJK0_ORYSI; Uncharacterized protein
TrEMBLI1Q9521e-154I1Q952_ORYGL; Uncharacterized protein
STRINGORUFI07G07590.11e-155(Oryza rufipogon)
STRINGOS07T0225300-011e-155(Oryza sativa)
STRINGORGLA07G0064400.11e-155(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44143071
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.13e-63NAC domain containing protein 32
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  3. Ghosh T,Rai M,Tyagi W,Challam C
    Seedling stage low temperature response in tolerant and susceptible rice genotypes suggests role of relative water content and members of OsSNAC gene family.
    Plant Signal Behav, 2016. 11(5): p. e1138192
    [PMID:26829663]
  4. Rahman H,Ramanathan V,Nallathambi J,Duraialagaraja S,Muthurajan R
    Over-expression of a NAC 67 transcription factor from finger millet (Eleusine coracana L.) confers tolerance against salinity and drought stress in rice.
    BMC Biotechnol., 2016. 16 Suppl 1: p. 35
    [PMID:27213684]