PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539994.1_FGP003
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 329aa    MW: 34830.3 Da    PI: 6.4241
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539994.1_FGP003genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.74.7e-32185240156
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                        k+r++W+peLH+rFv a+++LGG++ AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  KN539994.1_FGP003 185 KARRCWSPELHRRFVAALQRLGGPQAATPKQIRELMKVDGLTNDEVKSHLQKYRLH 240
                        68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.583182242IPR017930Myb domain
SuperFamilySSF466892.03E-17183243IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-29183243IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-26185240IPR006447Myb domain, plants
PfamPF002492.5E-7187238IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MEVFRRELPI SVHLIADGEL YLHPLPARSL DLPLDFMDDY SLRSSWSSSD RVAQGRGGEA  60
AAATAAGGVK AEADANDKRS WMSSAQLWSC GSHTSTSTSN GGSVKKQQQH KVSNAFMPLA  120
TSPAFAKSPE KADAATPLPA AVPDLSLSSP AAMADAPACP TAPSATSSAV TDVAGAQRQQ  180
AVQRKARRCW SPELHRRFVA ALQRLGGPQA ATPKQIRELM KVDGLTNDEV KSHLQKYRLH  240
TRRASDGGGG GGGLWPPPSE QYTTSQHSTS QSGSPQGPLQ LTVSSSHAVS VTAGDSCDGG  300
EEEEEEEEDR KSESYSWEMQ NGARASSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-13185238255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-13185238255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A8e-14185238154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B8e-14185238154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C8e-14185238154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D8e-14185238154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-13185238255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-13185238255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-13185238255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-13185238255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-13185238255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-13185238255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539994.1_FGP003
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL8448802e-99AL844880.3 Oryza sativa chromosome 12, . BAC OSJNBb0049H14 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149682e-99AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankCP0126202e-99CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618787.11e-142transcription factor HHO6
TrEMBLI1R7H61e-153I1R7H6_ORYGL; Uncharacterized protein
STRINGORGLA12G0148200.11e-154(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55823353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.16e-29G2-like family protein