PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540005.1_FGP002
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 202aa    MW: 21855.6 Da    PI: 8.6448
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540005.1_FGP002genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.81.9e-13250455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                       +h  +Er+RR+++N+ ++ Lr+l+P     + k+ + a+i   +v+YIk+Lq
  KN540005.1_FGP002  2 SHITVERNRRKQMNEHLAVLRSLMPCF---YVKRGDQASIIGGVVDYIKELQ 50
                       7999**********************9...9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.67E-13154No hitNo description
SuperFamilySSF474598.37E-17174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.811149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-10250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.5E-13261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-11455IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009913Biological Processepidermal cell differentiation
GO:0010374Biological Processstomatal complex development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MSHITVERNR RKQMNEHLAV LRSLMPCFYV KRGDQASIIG GVVDYIKELQ QVLRSLEAKK  60
NRKAYADQVL SPRPSPAAAA LMVKPTPPIS PRLVTELAAR GGASCRPLVI PSSAADIAGI  120
VGVPDVRVEF AGPNLVLKTV SHRAPGQALK IIAALESLSL EILHVSICTV DDATVLSFTI  180
KVGIECELSA EELVQEIQQT FL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540005.1_FGP002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126101e-145CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882342.15e-82transcription factor SPEECHLESS
TrEMBLA0A3L6QHE71e-85A0A3L6QHE7_PANMI; Transcription factor SPEECHLESS-like
STRINGPavir.Ab01030.1.p1e-80(Panicum virgatum)
STRINGOBART02G11110.17e-81(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34843577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06120.16e-56bHLH family protein