PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540018.1_FGP007
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 181aa    MW: 21053.9 Da    PI: 9.9689
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540018.1_FGP007genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.78.7e-181763455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                        hn  ErrRRdriN+++  L+ellP++     +K +K+++L +A++Y+ksLq
  KN540018.1_FGP007 17 FHNFSERRRRDRINEKLKALQELLPNC-----TKTDKVSMLDEAIDYLKSLQ 63
                       59*************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.109.4E-201070IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.5271362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-211689IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.74E-171667No hitNo description
PfamPF000104.8E-151863IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-181968IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MEARRPTPTR RSRSAEFHNF SERRRRDRIN EKLKALQELL PNCTKTDKVS MLDEAIDYLK  60
SLQLQLQMLV MGKGMAPVVP PELQQYMHYI TADPSQIPPI RPSEPRPFQI THATQQRQSN  120
VESDFLSQMQ NLHPSEPPQN FLRPPKLQLY TPEQQRRGLA SSSGHNSGWI TERNSSYNFL  180
E
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12126ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540018.1_FGP007
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1066890.0AK106689.1 Oryza sativa Japonica Group cDNA clone:002-114-C05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634978.11e-132transcription factor PIF1
RefseqXP_015634980.11e-132transcription factor PIF1
TrEMBLB8AUF91e-131B8AUF9_ORYSI; Uncharacterized protein
TrEMBLI1PPY91e-131I1PPY9_ORYGL; Uncharacterized protein
TrEMBLQ7FA231e-131Q7FA23_ORYSJ; OSJNBa0058K23.6 protein
STRINGOS04T0618600-011e-131(Oryza sativa)
STRINGORGLA04G0225800.11e-131(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95623043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.11e-26phytochrome interacting factor 3-like 5