PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540061.1_FGP004
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 317aa    MW: 35454 Da    PI: 9.5263
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540061.1_FGP004genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.31.2e-15182233155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV+++++ grW A+I  +s    +k  +lg+f t eeAa+a++ a+ k++g
  KN540061.1_FGP004 182 SIYRGVTRHHQHGRWQARIGRVSG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 233
                        57****************999754...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510329.13783147IPR001471AP2/ERF domain
SMARTSM003800.016109153IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-5123148IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.2E-5124148IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-18182242IPR016177DNA-binding domain
CDDcd000181.33E-24182243No hitNo description
PfamPF008476.3E-11182233IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.7E-19183241IPR001471AP2/ERF domain
SMARTSM003803.9E-34183247IPR001471AP2/ERF domain
PROSITE profilePS5103219.137183241IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MATYCAGGVD DVGHHHHHHH VHQHQQQHGG GLFYNPAAVA SSFYYGGGHD AVVTSAAGGG  60
SYYGAGFSSM PLKSDGSLCI MEALRGGDQE QQGIGGLGDM RHTSGTTAVR RKARPEKDAK  120
CILEKAARAY DLAALKYWGP STHINFPLED YQEELEEMKN MSRQEYVAHL RRKSSGFSRG  180
ASIYRGVTRH HQHGRWQARI GRVSGNKDLY LGTFSTQEEA AEAYDVAAIK FRGLNAVTNF  240
DITRYDVDKI LESSTLLPGE LARRKVKNHT KADRYSKAKL EVRYCPVLMR DIMIKLWVTY  300
FPPSFAELRQ SFAMIRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540061.1_FGP004
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2417120.0AK241712.1 Oryza sativa Japonica Group cDNA, clone: J065197H24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879549.16e-93AP2-like ethylene-responsive transcription factor CRL5 isoform X1
RefseqXP_025879550.16e-93AP2-like ethylene-responsive transcription factor CRL5 isoform X2
TrEMBLA0A0E0LGN01e-103A0A0E0LGN0_ORYPU; Uncharacterized protein
STRINGOPUNC07G01740.11e-104(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.13e-87AP2 family protein