PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN540066.1_FGP002

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 492aa MW: 54017.2 Da PI: 4.556

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN540066.1_FGP002	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	45.1	3.2e-14	72	154	51	128
NAM 51 vkaeekewyfFskrdkkya.tgkrknra.....tksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +e++wyfF+ r+ +++ +++++nr+ +++g W+atg+ ++ k +++++g+k++L++ +a+++e+ +W mhey + KN540066.1_FGP002 72 KGYGENRWYFFTVRKPSKTkKKDEPNRKvvvdgVEEGSWSATGSVAYICGKdHETVIGTKRVLTYK--SARSAEEDKWSMHEYVM 154 334788***9988766615779999656666679*********99667779****9..5666669******75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	15.491	26	188	IPR003441	NAC domain
Pfam	PF02365	2.5E-8	56	153	IPR003441	NAC domain
SuperFamily	SSF101941	1.44E-14	73	188	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 492 aa Download sequence Send to blast
MGGCSSKSKK AKNQKGNSNA EAKATTTTAG QQPPAAASSG GMSARASPRT NNDVMAAVTA 60 GSLSLCVLEK YKGYGENRWY FFTVRKPSKT KKKDEPNRKV VVDGVEEGSW SATGSVAYIC 120 GKDHETVIGT KRVLTYKSAR SAEEDKWSMH EYVMLDKSQL VCPKIDSHHS QITAYQMDQY 180 VLCAIQLKQT YEAEKKAQEE EERGVKRKRT ATRKRRKGDI DQTTSQEQED QQQETPPPGD 240 PHDQSVVDAP YYSTQMALGG EEEVAPVPWC ADCMAQPDRI EYPAVWYNQQ EQQPLQSVDR 300 SMMTQGYIGD LSYIQNQFDQ RQAHDHGSIN AFDEALDQCH DTNFAWDNAG IYPGNNLLDG 360 NLDDDTQDQF GNQATLGALT GELEYGTGYQ FHDALQATPG SDDASAQSMG IQPAAGHSMG 420 DDDETCCNDD LSSLLADISR ILLDGNGVIN NEGNPEGSNQ GLHICKDGHQ WPLEESTMPT 480 VECVLQHPGE SA

Sequence ? help Back to Top

Protein Sequence Length: 492 aa Download sequence Send to blast

MGGCSSKSKK AKNQKGNSNA EAKATTTTAG QQPPAAASSG GMSARASPRT NNDVMAAVTA  60
GSLSLCVLEK YKGYGENRWY FFTVRKPSKT KKKDEPNRKV VVDGVEEGSW SATGSVAYIC  120
GKDHETVIGT KRVLTYKSAR SAEEDKWSMH EYVMLDKSQL VCPKIDSHHS QITAYQMDQY  180
VLCAIQLKQT YEAEKKAQEE EERGVKRKRT ATRKRRKGDI DQTTSQEQED QQQETPPPGD  240
PHDQSVVDAP YYSTQMALGG EEEVAPVPWC ADCMAQPDRI EYPAVWYNQQ EQQPLQSVDR  300
SMMTQGYIGD LSYIQNQFDQ RQAHDHGSIN AFDEALDQCH DTNFAWDNAG IYPGNNLLDG  360
NLDDDTQDQF GNQATLGALT GELEYGTGYQ FHDALQATPG SDDASAQSMG IQPAAGHSMG  420
DDDETCCNDD LSSLLADISR ILLDGNGVIN NEGNPEGSNQ GLHICKDGHQ WPLEESTMPT  480
VECVLQHPGE SA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN540066.1_FGP002

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012618	0.0	CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0E0B8E3	0.0	A0A0E0B8E3_9ORYZ; Uncharacterized protein
STRING	OGLUM10G03910.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11556	21	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15510.1	9e-10	NAC domain containing protein 2