PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540074.1_FGP007
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 150aa    MW: 16567.7 Da    PI: 8.5032
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540074.1_FGP007genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.61.9e-1284129655
                        HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +++Er RR ri +++ +L++l+P+     +k  + +++L  Av YIk+Lq
  KN540074.1_FGP007  84 SIAERERRTRISKRLKKLQDLVPNM----DKQTNTSDMLDIAVTYIKELQ 129
                        689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.94178128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-1581138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.91E-1282133No hitNo description
Gene3DG3DSA:4.10.280.101.4E-1583139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-1284134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.6E-1084129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MSSWDDTNSI MFSPPSSSKK ARVAAAGDHG DDMVSSFSNI DSQFGLSKQS SLGMAGMDDF  60
LQLQPDSVAC RARAKRGCAT HPRSIAERER RTRISKRLKK LQDLVPNMDK QTNTSDMLDI  120
AVTYIKELQG QVEKLKHDQA NCTCSGKHDC
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540074.1_FGP007
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0682540.0AK068254.1 Oryza sativa Japonica Group cDNA clone:J013149F02, full insert sequence.
GenBankAK1057130.0AK105713.1 Oryza sativa Japonica Group cDNA clone:001-201-E12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613853.11e-100transcription factor bHLH128
SwissprotQ8H1022e-44BH128_ARATH; Transcription factor bHLH128
TrEMBLA0A0E0JSA91e-104A0A0E0JSA9_ORYPU; Uncharacterized protein
STRINGORUFI01G44010.11e-100(Oryza rufipogon)
STRINGOS01T0900800-011e-100(Oryza sativa)
STRINGONIVA01G45730.11e-100(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP70713752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.19e-47bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]