PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540075.1_FGP002
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 88aa    MW: 9808.17 Da    PI: 8.5174
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540075.1_FGP002genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.90.000213551454
                       HHHHHHHHHHHCTSCCC.......TTS-STCHHHHHHHHHHHHHH CS
                HLH 14 driNsafeeLrellPkas....kapskKlsKaeiLekAveYIksL 54
                       d+i + +++L++llP++s    ++++   +K   L++ + YIksL
  KN540075.1_FGP002 13 DEITELISKLQSLLPESSrrrgATSGSPATK--LLKEMCSYIKSL 55
                       67999***********877775333333444..588888999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.5E-61376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-61379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MSGRRASGRI TDDEITELIS KLQSLLPESS RRRGATSGSP ATKLLKEMCS YIKSLHREVD  60
DLSERLSELM ATMDSNSPQA DIIRSLLR
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of grain size. Binds the transcription repressor APG and forms a heterodimer of antagonistic basic helix-loop-helix transcription factors that regulates grain length and weight by controlling cell elongation in lemma and palea (By similarity). {ECO:0000250}.
UniProtAtypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of grain size. Binds the transcription repressor APG and forms a heterodimer of antagonistic basic helix-loop-helix transcription factors that regulates grain length and weight by controlling cell elongation in lemma and palea. {ECO:0000269|PubMed:23136524}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540075.1_FGP002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8379421e-138CT837942.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN015N03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613962.17e-54transcription factor ILI3-like
SwissprotA2X9L88e-32ILI5_ORYSI; Transcription factor ILI5
SwissprotQ6YUX08e-32ILI5_ORYSJ; Transcription factor ILI5
TrEMBLA0A0D3HDF72e-52A0A0D3HDF7_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0BA882e-52A0A0E0BA88_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0EXJ42e-52A0A0E0EXJ4_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0QYU42e-52A0A0E0QYU4_ORYRU; Uncharacterized protein
TrEMBLA2Z7292e-52A2Z729_ORYSI; Uncharacterized protein
TrEMBLI1QUB12e-52I1QUB1_ORYGL; Uncharacterized protein
TrEMBLQ8LNC72e-52Q8LNC7_ORYSJ; BHLH family protein, putative, expressed
STRINGOGLUM10G09100.13e-53(Oryza glumipatula)
STRINGOMERI10G06270.13e-53(Oryza meridionalis)
STRINGORUFI10G09690.13e-53(Oryza rufipogon)
STRINGOS10T0403800-003e-53(Oryza sativa)
STRINGORGLA10G0079400.13e-53(Oryza glaberrima)
STRINGOBART10G09290.13e-53(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92838145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.13e-27bHLH family protein