PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540082.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 990aa    MW: 110492 Da    PI: 8.2794
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540082.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.23.2e-1811921199
                       HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                 B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                       + ++ +v+p +f++++  k  +s t+tle+++g+ ++v +   k+ +r++l +GW+ Fv+an ++e+Df+ F++ g+s+f   v+vf++
  KN540082.1_FGP001 11 F-KHSMVIPDRFLSHFAAK--SSGTITLETPNGNMYKVGV--GKNMKRTLLLSGWEAFVHANSIQENDFLSFRYRGSSRF--AVTVFDA 92
                       4.456********777655..5669***************..********************************998888..9999987 PP
2B351.12.5e-165656481197
                        HHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                 B3  11 lksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                         k ++l l+ ++a++h      +s++++l+  +g++We k+i++++  r +lt+GW +F+ +n+L++gD+++F+l+++++ ++ v+v+
  KN540082.1_FGP001 565 RKCCLLELSSRYAAQHlP---GTSQDVVLQC-KGNTWETKMIVSGNLTRWFLTGGWPKFACDNRLRAGDICLFELKEERRLTMAVHVI 648
                        345888999****99942...3556788665.9******************************************9989998888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.93193IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-19394IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.2E-10393IPR003340B3 DNA binding domain
CDDcd100171.20E-18891No hitNo description
Gene3DG3DSA:2.40.330.109.5E-19993IPR015300DNA-binding pseudobarrel domain
PfamPF023624.4E-161092IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.5E-11196306IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-11197296IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508636.428203302IPR003340B3 DNA binding domain
SMARTSM010191.2E-4203302IPR003340B3 DNA binding domain
CDDcd100171.54E-9203296No hitNo description
Gene3DG3DSA:2.40.330.104.2E-18548646IPR015300DNA-binding pseudobarrel domain
CDDcd100171.13E-16549648No hitNo description
SuperFamilySSF1019367.85E-17549648IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.18555649IPR003340B3 DNA binding domain
SMARTSM010191.9E-7558653IPR003340B3 DNA binding domain
PfamPF023628.5E-14566648IPR003340B3 DNA binding domain
SuperFamilySSF484031.99E-24676852IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.9E-27677855IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029712.806678736IPR020683Ankyrin repeat-containing domain
SMARTSM00248240678708IPR002110Ankyrin repeat
PfamPF127961.7E-8679736IPR020683Ankyrin repeat-containing domain
CDDcd002041.03E-19707851No hitNo description
SMARTSM002480.024712741IPR002110Ankyrin repeat
PROSITE profilePS500889.511712736IPR002110Ankyrin repeat
PfamPF127961.3E-10778853IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0085798827IPR002110Ankyrin repeat
PROSITE profilePS500889.725801830IPR002110Ankyrin repeat
PROSITE profilePS502979.702801830IPR020683Ankyrin repeat-containing domain
SMARTSM00248130830858IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.101.4E-28858969IPR011990Tetratricopeptide-like helical domain
SuperFamilySSF484522.68E-31861969IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS500059.175861894IPR019734Tetratricopeptide repeat
PROSITE profilePS5029317.581861962IPR013026Tetratricopeptide repeat-containing domain
SMARTSM0002810861894IPR019734Tetratricopeptide repeat
SMARTSM0002836895928IPR019734Tetratricopeptide repeat
PROSITE profilePS500058.349929962IPR019734Tetratricopeptide repeat
SMARTSM000280.002929962IPR019734Tetratricopeptide repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 990 aa     Download sequence    Send to blast
MKFIWQMNGN FKHSMVIPDR FLSHFAAKSS GTITLETPNG NMYKVGVGKN MKRTLLLSGW  60
EAFVHANSIQ ENDFLSFRYR GSSRFAVTVF DASGLEKKKA RTYIDILSSL DDHTTQSSAS  120
DTSDECQKAR PNHHGKQAKK PSVSSSEDLS AEDGSSGHRS LESEDLGRFS SPYYLPGHHK  180
LAEEQKAELV ALVDKIQPEI CVLVIIMNKT NVKRHPDLVV PKDYALLHFP HKNQIITLEL  240
PGKRKNWACK FRIRADGGGR HLYLGDFVHD NRILEGDLCI LQPMTKNDAS VFTMTVQLIR  300
KQRTDIASSH QIRKINSGGI SSSSHHDTTR YNQGDKRFEE RFARRDSSSH FRKITKMAHE  360
ESGEGSPDEN DSFKSDDLQT LPITDYVLSY KSYLSGAQTR QVIMLLQEIR PKKPVLVTVM  420
RKKNVQSSSP FLGDICLFEP MKGGKFFVFT VHLLRAAPTD RLGGISDQRA SSSHGRTNPK  480
MASGVHIKEE PTDGGNGCSE NKKHGASNES LQNRKSNDSP YVLPHRSHLS PFQEQVVLEK  540
IEAIRCEVPI CVAIIEDYNV DYSSRKCCLL ELSSRYAAQH LPGTSQDVVL QCKGNTWETK  600
MIVSGNLTRW FLTGGWPKFA CDNRLRAGDI CLFELKEERR LTMAVHVIFR LAKMLDMGRG  660
RLAKFVGEVR VEGVPQLEGV GVMHAAAASG SLAMCTYLVE TLQLDVNDVS NKGSTALFNA  720
VELGNLDIIK YLLDHGGFLV IAANLCPAIE RKGANLTVYS FQQLLVIWLY TVPQMFGGHC  780
AIVKELLAKG AYVDPVSVYG TPLHIAALEG KDNTLKILLD HDADCNRVVN GKTPLLLAKR  840
AASERCVELL VEDKVVNESK IAELKSLASR AAQIKDYLSA AEFYSKAIDL DPDDATLLSN  900
RSLCWLHMGD GDKALLDAHE CRKKRPDWPK ACYRQGTALM LLKDYRRACE ALFDGLKLDP  960
ENAEIEDALR YPLTPSHATA YYCNPVFHGQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540082.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2370910.0AC237091.1 Oryza glaberrima clone OG_BBa0009K13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0ATY70.0A0A0E0ATY7_9ORYZ; Uncharacterized protein
STRINGOGLUM08G11390.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.15e-22B3 family protein