PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540097.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 740aa    MW: 83566.2 Da    PI: 5.8812
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540097.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY41.82.1e-134499259
                       --SS-EEEEEEE--TT-SS-..EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY  2 dDgynWrKYGqKevkgsefp..rsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                       dDgy Wr  Gq +++g   p   s Y+C++a+C v+k v +sa     vei Y+g+H h+
  KN540097.1_FGP001 44 DDGYYWRMTGQNTIQGGSSPtiLSHYQCAQANCAVQKTVAHSA----DVEILYKGRHSHP 99
                       8**************97777336*****************999....5899********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.5E-1143100IPR003657WRKY domain
SuperFamilySSF1182901.06E-1143100IPR003657WRKY domain
SMARTSM007745.5E-643100IPR003657WRKY domain
PfamPF031066.5E-124499IPR003657WRKY domain
PROSITE profilePS5081111.1344101IPR003657WRKY domain
SMARTSM006143.1E-13171222IPR003656Zinc finger, BED-type
PfamPF028924.2E-5174218IPR003656Zinc finger, BED-type
SuperFamilySSF576672.26E-5174222No hitNo description
SuperFamilySSF530989.1E-43325728IPR012337Ribonuclease H-like domain
PfamPF143724.7E-21583675IPR025525hAT-like transposase, RNase-H fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 740 aa     Download sequence    Send to blast
MADEGFRPFS ALMSAPSTAQ QHAGSSSSTA LLIQVDGNIC VADDDGYYWR MTGQNTIQGG  60
SSPTILSHYQ CAQANCAVQK TVAHSADVEI LYKGRHSHPR QSDRLEPMSQ VGVLVEASDA  120
AGAAVGPSVP GTGNGDDQSS GSSDRDEDDE GDVEMDGDAA AGDSNAMQRR KLKSKVWKEF  180
KPVCKDGKLH IGICNHCKGR LVGKTNNGTS HLRRHLKICP AKAGTSRVQK KQRSSTSQPD  240
LPVLENLVND EENPTENLES GQENPLEEFM RAIVLRLSPF SAMHSASIAS FLAGRNPAPY  300
MVRQTTDEEK FHSVYENEKL KLKEKIIATP GGVFLSLEVC YWYRYITARI VCLAVHFIDE  360
DWKINRKTIR CSLSEYGQSL RFYPHWESKV ADVKDHDKMV LKEVVRDWCL EQKLLGMALD  420
KSVDETTTAS LEDDLTTGRN YLVAKCKLLT IPCMVDAIHG LLLCCTFWGK ESVWSRYMTS  480
SPERKLKYQE VLSQLPLECP SPGSQTWYLR YCLSEAALQF VKSFPLPDAS ADDELDFSDS  540
SDPGDPSFDD PSYDDLEAAE NFCNIARPVY HAIKTVSNPY NVTCSYFHVI WSLRTTLQEL  600
PSIKNIESVL EVEAMQRRFE KHWNKWYLWL SIAVVLDPRY KFDYIDRCFR QAFGHDAMIY  660
ISEVRVKLYE VYIQYFYVSE RSNEMLSRRN NGSDTQTSVP LHNHSQNNTT AQTVDEEVKE  720
LVTYIGYFQV LFSFHNPLRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540097.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649908.10.0zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1
RefseqXP_015649909.10.0zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1
RefseqXP_015649910.10.0zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1
RefseqXP_015649911.10.0zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1
RefseqXP_015649912.10.0zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1
TrEMBLA0A0P0XDB50.0A0A0P0XDB5_ORYSJ; Os08g0198400 protein
STRINGORUFI08G06360.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140321024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01080.17e-10WRKY DNA-binding protein 58