PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540097.1_FGP004
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 186aa    MW: 20063.9 Da    PI: 4.4647
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540097.1_FGP004genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY55.11.5e-1754109359
                        -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        DgynWr  GqK v+g  + + YY C++a+C + k v rsa d+++ +++ +g+Hnh+
  KN540097.1_FGP004  54 DGYNWRICGQKLVQGGCHQKFYYECSQANCGAEKSVTRSA-DGQIKKTVCKGSHNHP 109
                        9***************************************.***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182902.75E-1750110IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-1552110IPR003657WRKY domain
SMARTSM007743.5E-1052110IPR003657WRKY domain
PfamPF031061.1E-1554109IPR003657WRKY domain
PROSITE profilePS5081114.07954111IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MADQRFRSWL TEQLNMQQQN AGCSSNPAPA VMQMPALPSH TDYGGIYPNP TEYDGYNWRI  60
CGQKLVQGGC HQKFYYECSQ ANCGAEKSVT RSADGQIKKT VCKGSHNHPR SSERVFGDGS  120
ATLDAIPVGE ILQAAGVIRP SVAMPRNEEE DELQSGSSDS EEDDDSEARA DGDGAAGDAN  180
AIRCSI
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540097.1_FGP004
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0054160.0AP005416.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBb0094P23.
GenBankAP0054990.0AP005499.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0412D08.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649132.11e-110zinc finger BED domain-containing protein RICESLEEPER 1-like
RefseqXP_015649133.11e-110zinc finger BED domain-containing protein RICESLEEPER 1-like
TrEMBLA0A0D3GX911e-128A0A0D3GX91_9ORYZ; Uncharacterized protein
STRINGOBART08G05640.11e-129(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140321024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01080.12e-16WRKY DNA-binding protein 58