PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540100.1_FGP010
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 245aa    MW: 26424.7 Da    PI: 5.7833
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540100.1_FGP010genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM60.74.7e-192488165
                NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvkaeekewyfFskrd 65
                       lppGfrFhPtdeelv++yL++kv +  +    v i+evd++++ePw+Lp++++ +ekew f    d
  KN540100.1_FGP010 24 LPPGFRFHPTDEELVTFYLAAKVFNGACCG-GVdIAEVDLNRCEPWELPEAARMGEKEWIFHKVGD 88
                       79*************************888.455***************88888999998876544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-201585IPR003441NAC domain
PROSITE profilePS5100515.40124186IPR003441NAC domain
PfamPF023656.8E-82585IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MGDALWEMLG EEMAAAAAAG EHGLPPGFRF HPTDEELVTF YLAAKVFNGA CCGGVDIAEV  60
DLNRCEPWEL PEAARMGEKE WIFHKVGDQY SKLMMMKSPA SYYLPVSHHH PSSIFHDLPP  120
VPFPNPSLVP FHHDHLPTSF VHPPLLQHSH ANSKNSSSNN GGFVFPNEPN TTNSSDNHTA  180
CNGAMAAAAF PSFSCATVTG KGGPPAQLGV NAGQQEPPPP TWMDVYLQHS GFIYEMGPPA  240
VPRGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-131889979Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540100.1_FGP010
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0060490.0AP006049.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0016N23.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648828.12e-93protein CUP-SHAPED COTYLEDON 3
TrEMBLI1QK251e-98I1QK25_ORYGL; Uncharacterized protein
STRINGORGLA08G0177600.12e-99(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112373341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.19e-30NAC family protein