PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540113.1_FGP003
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 243aa    MW: 27498.6 Da    PI: 8.7663
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540113.1_FGP003genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY53.54.7e-1799160259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S.SSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa.edpkvveitYegeHnhe 59 
                        +Dg++WrKYG K++ +sef + YYrC ++   +C++kk v++++ + p  + +t ++eH+++
  KN540113.1_FGP003  99 NDGFHWRKYGEKNILNSEFRKLYYRCGYSderKCRAKKYVQQENnKHPPEFRVTLTNEHTCN 160
                        7**************************998899*******98761578899********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182901.22E-1892160IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.2E-1993160IPR003657WRKY domain
SMARTSM007741.8E-2698161IPR003657WRKY domain
PROSITE profilePS5081112.62299162IPR003657WRKY domain
PfamPF031068.5E-2099159IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MARRLPKSER SPSPPPPPPP GDQRDAAIQE LSKGSELATQ LMAQLELIPE RGARRPPRRR  60
AGQPTSVSGA GGARKTKRRR GKHGEELIET VFITTTPEND GFHWRKYGEK NILNSEFRKL  120
YYRCGYSDER KCRAKKYVQQ ENNKHPPEFR VTLTNEHTCN TLFQDQPSSS STNSQVLDFT  180
KASISSPLMD SHVSAPILKE EEEEEVPSID ESSRIMSTIM RNYGSYGDYD ESSPQSWNGA  240
GWQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15779RRRAGQPTSVSGAGGARKTKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540113.1_FGP003
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8364070.0CT836407.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA113F18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638351.11e-141probable WRKY transcription factor 63
TrEMBLA0A0E0DT281e-141A0A0E0DT28_9ORYZ; Uncharacterized protein
STRINGOMERI05G17320.11e-142(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99932944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66600.12e-14ABA overly sensitive mutant 3