PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540122.1_FGP005
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 734aa    MW: 78865.5 Da    PI: 4.7081
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540122.1_FGP005genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.13.3e-085906281255
                        HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        RR++i +++ +L++l+P++      K +Ka++L + ++Y+k Lq
  KN540122.1_FGP005 590 RREKISERMKNLQDLVPNS-----NKADKASMLDEIIDYVKFLQ 628
                        9*****************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF004215.7E-14339372IPR000932Photosystem antenna protein-like
SuperFamilySSF1610774.45E-108339590IPR000932Photosystem antenna protein-like
PfamPF004217.3E-21370428IPR000932Photosystem antenna protein-like
PfamPF004217.0E-75428590IPR000932Photosystem antenna protein-like
PROSITE profilePS5088812.506578627IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-7589633IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-5590628IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.35E-9590632No hitNo description
SuperFamilySSF474592.62E-12590638IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-13591637IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009767Biological Processphotosynthetic electron transport chain
GO:0009521Cellular Componentphotosystem
GO:0016168Molecular Functionchlorophyll binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 734 aa     Download sequence    Send to blast
MDYSAGSYMW PSNSGSENYN FVDGSSESYA EEGSLPPSGY FMGDGSDRSL KITENERNPT  60
MLANGCLPYN TQAHPLSGQI LPKGELPNNL LDLQQLQNNS NLRSNSIPPG VLQCNSTSGT  120
FDTKLDTPGL AELPHTLSSS IDSNGSDISA FLADVHAVSS APTLCSAFQN VSSFMEPVNL  180
EAFGFQGAQN VAMLNKTSLP NGNPSLFDNA AMASLHDSKE FLNGGSIPSF GTVLQALGAG  240
GLKAAQQEQN VRNIPLPTFT SGSHLAVTDA QGPPLPSKIP PLIHDHKIEY PINHSSDVEP  300
QANSAPGNSA SAKPRTRARR GQATDPHSIA ERNPLEGLAL VSGWAGSMAL YELAVFDPSD  360
PVLDPMWRQG VACFGFGAFH VTGLYGPGIW VSDPYGLTGK VQAVNPAWGA EGFDPFVPGG  420
IASHHIAAAF VVAGTMWYGS ATTPIELFGP TRYQWDQGYF QQEIYRRVSD GLAENLSLSE  480
AWSKIPEKLA FYDYIGNNPA KGGLFRAGSM DNGDGIAVGW LGHPIFRDKE GRELFVRRMP  540
TFFETFPVVL VDEEGIVRAD VPFRRAESKY SVEQVGVTVE FYGGELNGLR REKISERMKN  600
LQDLVPNSNK ADKASMLDEI IDYVKFLQLQ VKVLSMSRLG APGAVLPLLR ESQTECHSNP  660
SLSASTISQG APDIPDSEDS SAFEQEVVKL METSITSAMQ YLQNKGLCLM PIALASAISN  720
QKGMAAAAAI PPEK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3jcu_b1e-1373145894409Photosystem II CP47 reaction center protein
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540122.1_FGP005
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0656670.0AK065667.1 Oryza sativa Japonica Group cDNA clone:J013042L14, full insert sequence.
GenBankAY2389910.0AY238991.1 Oryza sativa bHLH transcription factor PTF1 (PTF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644031.10.0transcription factor SPATULA isoform X1
RefseqXP_025882097.10.0transcription factor SPATULA isoform X1
TrEMBLA0A0E0DYA00.0A0A0E0DYA0_9ORYZ; Uncharacterized protein
STRINGOMERI06G06930.20.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.12e-40LJRHL1-like 1