PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN540132.1_FGP004

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 114aa MW: 11969.8 Da PI: 9.7249

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN540132.1_FGP004	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.3	3.2e-09	7	48	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 RR+ri +++ L+el+P+a ++ +Ka++L + ++Y+k Lq KN540132.1_FGP004 7 RRERIAERMKALQELVPNA--NKLMQTDKASMLDEIIDYVKFLQ 48 9***************7..48888***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.627	1	47	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.3E-7	6	53	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.49E-12	7	59	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-6	7	48	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.04E-10	7	52	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.8E-12	8	53	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 114 aa Download sequence Send to blast
MRGGGLRRER IAERMKALQE LVPNANKLMQ TDKASMLDEI IDYVKFLQLQ VKASTYTKLL 60 IHVLSMSRLG GAGAVAPLVA DMSSEGRGGG AANGGAPAAA GSDSLTVTEQ QLVV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN540132.1_FGP004

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005784	2e-48	AP005784.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0014G10.
GenBank	AP014965	2e-48	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBank	CP012617	2e-48	CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025799597.1	1e-40	glycine, alanine and asparagine-rich protein-like
Swissprot	Q9ZUG9	9e-30	BH066_ARATH; Transcription factor bHLH66
TrEMBL	Q6EPZ6	2e-64	Q6EPZ6_ORYSJ; BHLH transcription factor PTF1-like protein
STRING	ORUFI09G11120.1	2e-48	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1419	37	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	2e-24	LJRHL1-like 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]