PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540163.1_FGP007
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 170aa    MW: 18877.1 Da    PI: 7.723
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540163.1_FGP007genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.15.7e-125299455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                       +h+ +Er RR++i +++  L++l+P +    +k   Ka++L + ++YI+sLq
  KN540163.1_FGP007 52 SHSLAERARREKISERMKILQDLVPGC----NKVIGKASVLDEIINYIQSLQ 99
                       8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.02E-1846116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.19E-1146103No hitNo description
PROSITE profilePS5088816.3554898IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-1948117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-95299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-1154104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MKSSDKNDSL RTEAGTDSGN SSKAADKNAT PPEPPKQDYI HVRARRGQAT DSHSLAERAR  60
REKISERMKI LQDLVPGCNK VIGKASVLDE IINYIQSLQH QVEFLSMKLE AVNSHMNNGI  120
VAFPSKDFGA QPYNTAAGLT FDPQTTREFA QVSTSEWLHM QIGNAYERVT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540163.1_FGP007
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2426450.0AK242645.1 Oryza sativa Japonica Group cDNA, clone: J090025G02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645823.11e-123transcription factor BHLH094-like
SwissprotQ69WS31e-124BH094_ORYSJ; Transcription factor BHLH094
TrEMBLA0A0D3GNA91e-123A0A0D3GNA9_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0AGV01e-123A0A0E0AGV0_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0HXT91e-123A0A0E0HXT9_ORYNI; Uncharacterized protein
TrEMBLI1Q8S21e-123I1Q8S2_ORYGL; Uncharacterized protein
STRINGOGLUM07G05680.11e-123(Oryza glumipatula)
STRINGONIVA07G05030.11e-123(Oryza nivara)
STRINGORGLA07G0051400.11e-123(Oryza glaberrima)
STRINGOBART07G06150.11e-123(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30653577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.14e-70BIG PETAL P