PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540203.1_FGP003
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 92aa    MW: 10495.8 Da    PI: 9.3308
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540203.1_FGP003genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.81.1e-16229835
               GATA  8 kTplWRrgpdgnktLCnaCGlyyrkkgl 35
                       +TplWR+gp+g+k+LCnaCG++yrkk++
  KN540203.1_FGP003  2 STPLWRNGPRGPKSLCNACGIRYRKKRR 29
                       7************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501149.486125IPR000679Zinc finger, GATA-type
PfamPF003201.8E-14229IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.4E-12229IPR013088Zinc finger, NHR/GATA-type
SMARTSM004011.5E-5249IPR000679Zinc finger, GATA-type
CDDcd002027.65E-11229No hitNo description
SuperFamilySSF577167.13E-9228No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MSTPLWRNGP RGPKSLCNAC GIRYRKKRRE ALGLDAGEGG AERQEKKKSK RERGEEVTME  60
LRMVGFGKEG LSVETNQSHI QTEDWRMESD ND
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540203.1_FGP003
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0737096e-91AK073709.1 Oryza sativa Japonica Group cDNA clone:J033058P14, full insert sequence.
GenBankCT8319416e-91CT831941.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA112C03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631979.15e-40GATA transcription factor 16
TrEMBLA0A0D3FQY41e-38A0A0D3FQY4_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9ZFB61e-38A0A0D9ZFB6_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0GVZ01e-38A0A0E0GVZ0_ORYNI; Uncharacterized protein
TrEMBLA0A0E0P3H01e-38A0A0E0P3H0_ORYRU; Uncharacterized protein
TrEMBLA2XNM31e-38A2XNM3_ORYSI; Uncharacterized protein
TrEMBLQ850Z51e-38Q850Z5_ORYSJ; Expressed protein
STRINGOGLUM03G39650.12e-39(Oryza glumipatula)
STRINGORUFI03G41540.12e-39(Oryza rufipogon)
STRINGOS03T0831200-012e-39(Oryza sativa)
STRINGONIVA03G41600.12e-39(Oryza nivara)
STRINGOBART03G39750.12e-39(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24183892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36620.11e-13GATA transcription factor 19