PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540208.1_FGP004
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 172aa    MW: 19076.9 Da    PI: 8.2052
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540208.1_FGP004genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.32e-3090149159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        ++Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+r+a+d +++++tYeg+H h+
  KN540208.1_FGP004  90 MNDGCQWRKYGQKISKGNPCPRAYYRCTVApNCPVRKQVQRCADDMSILITTYEGTHSHP 149
                        58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182901.57E-2784151IPR003657WRKY domain
PROSITE profilePS5081127.53185151IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.9E-3086151IPR003657WRKY domain
SMARTSM007746.6E-3690150IPR003657WRKY domain
PfamPF031063.3E-2791149IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MDVVVESPPV RDEKKVDVAA IGGAPPIVFE SFAPSTQRDS TIIKKEEKME AAKAEMGEVR  60
EENERLKTML TRIVSDYKSL HTHFLDVVKM NDGCQWRKYG QKISKGNPCP RAYYRCTVAP  120
NCPVRKQVQR CADDMSILIT TYEGTHSHPL PPAAAAMAST TSAAAAMLTY QQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-2471153176WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540208.1_FGP004
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2892401e-140AK289240.1 Oryza sativa Japonica Group cDNA, clone: J100075H09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021762234.13e-54probable WRKY transcription factor 72
TrEMBLJ3KX467e-86J3KX46_ORYBR; Uncharacterized protein
STRINGOB01G15520.11e-86(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120812938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.13e-40WRKY DNA-binding protein 9