PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN540208.1_FGP006

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 118aa MW: 13626.1 Da PI: 10.9787

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN540208.1_FGP006	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	53.7	4.1e-17	40	70	1	31
---SS-EEEEEEE--TT-SS-EEEEEE-STT CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsag 31 ldDg++WrKYG+K vk+s++pr+YYrC+ ag KN540208.1_FGP006 40 LDDGFKWRKYGKKAVKSSPNPRNYYRCSAAG 70 59**************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.0E-16	28	70	IPR003657	WRKY domain
SuperFamily	SSF118290	5.1E-15	32	71	IPR003657	WRKY domain
PROSITE profile	PS50811	17.775	35	70	IPR003657	WRKY domain
SMART	SM00774	4.4E-8	40	78	IPR003657	WRKY domain
Pfam	PF03106	3.9E-12	41	69	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 118 aa Download sequence Send to blast
MAASLGLCHE TSLRYESEEK MRGRVNGRIG FRTRSEVEVL DDGFKWRKYG KKAVKSSPNP 60 RNYYRCSAAG VKLIRCAIFL IRAQEQGKPL QKLKIGFVKA RFLKIPNYIF SQPRMIII

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN540208.1_FGP006

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK109578	1e-64	AK109578.1 Oryza sativa Japonica Group cDNA clone:002-135-F06, full insert sequence.
GenBank	AP002486	1e-64	AP002486.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0510F03.
GenBank	AP014957	1e-64	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBank	AY341854	1e-64	AY341854.1 Oryza sativa (japonica cultivar-group) WRKY13 mRNA, complete cds.
GenBank	CT831287	1e-64	CT831287.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI020N10, full insert sequence.
GenBank	HQ858826	1e-64	HQ858826.1 Oryza sativa Japonica Group isolate UT1324 WRKY transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015638018.1	3e-32	probable WRKY transcription factor 50
TrEMBL	A0A0E0DMW6	2e-31	A0A0E0DMW6_9ORYZ; Uncharacterized protein
STRING	OMERI05G05120.1	4e-32	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP441	37	206

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26170.1	1e-22	WRKY DNA-binding protein 50