PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN540216.1_FGP005

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HB-other

Protein Properties

Length: 210aa MW: 24147 Da PI: 5.1478

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN540216.1_FGP005	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.4	3.8e-21	70	121	5	56
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++t++q++ Le++Fe++ y+ ++r eLAkklg++erqVk+WFqNrR+++k KN540216.1_FGP005 70 KRHTDDQIKHLESVFERCTYLGGNQRVELAKKLGMEERQVKFWFQNRRTRKK 121 579***********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.6E-21	55	122	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.827	63	123	IPR001356	Homeobox domain
SuperFamily	SSF46689	6.27E-19	64	121	IPR009057	Homeodomain-like
SMART	SM00389	1.2E-17	65	127	IPR001356	Homeobox domain
CDD	cd00086	1.61E-18	67	121	No hit	No description
Pfam	PF00046	1.7E-18	70	121	IPR001356	Homeobox domain
PRINTS	PR00031	1.5E-6	94	103	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	98	121	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.5E-6	103	119	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MQKDVIHSIP DRLIMDNGSQ QESSNLHVLH LPFASVIGVE DHTEEADDAA VDYHDDSSEG 60 QDEVSNKRMK RHTDDQIKHL ESVFERCTYL GGNQRVELAK KLGMEERQVK FWFQNRRTRK 120 KMHDERQEGM WLQEENDVLH AENKVLKEAM WANICFTCGS PVVPAIPTVQ HRYLSFQNMR 180 LADELQHATA VFNMVAQDAD VGLATSVPFD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN540216.1_FGP005

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004298	1e-150	AP004298.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0409D09.
GenBank	AP005690	1e-150	AP005690.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBa0052I14.
GenBank	AP014963	1e-150	AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBank	CP012615	1e-150	CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0E0EAI9	1e-141	A0A0E0EAI9_9ORYZ; Uncharacterized protein
STRING	OMERI07G09630.1	1e-142	(Oryza meridionalis)
STRING	ORUFI07G12260.1	1e-142	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14930	16	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61150.1	2e-32	homeodomain GLABROUS 1