PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540220.1_FGP002
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 250aa    MW: 27032.9 Da    PI: 5.6696
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540220.1_FGP002genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.94.2e-1476126255
                        HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        ++ah ++Er+RR+++N+ ++ Lr+l+P     + k+ + a+i   +v+YIk+Lq
  KN540220.1_FGP002  76 KTAHIAVERNRRKQMNENLAVLRSLMPCF---YVKRGDQASIIGGVVDYIKELQ 126
                        689*************************9...9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.51374125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.3E-1676138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-1476137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.28E-1476130No hitNo description
PfamPF000103.1E-1176126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-1080131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MGDALCDQLL LVDSDGGEFI PHHADADADD LFAILETWED CGNVVGGSAP ATTTTLGSPI  60
AAAACISGVV VATTPKTAHI AVERNRRKQM NENLAVLRSL MPCFYVKRGD QASIIGGVVD  120
YIKELQQVLH SLEAKKQRKV YTDQVEFAGA NLVLKTVSQR SPGQAVKIIA ALEGRSLEIL  180
HAKISTVDDT AVNSFTVKSN DLRVISGQSS NSKLKVARFL KMERYIFGQI GIECELSAEE  240
LVQVIQQTFT
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540220.1_FGP002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2874821e-111AK287482.1 Oryza sativa Japonica Group cDNA, clone: J043025B18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882342.13e-72transcription factor SPEECHLESS
TrEMBLA0A0E0LC631e-72A0A0E0LC63_ORYPU; Uncharacterized protein
STRINGOPUNC06G15310.12e-73(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34843577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06120.12e-41bHLH family protein