PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540251.1_FGP004
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 155aa    MW: 16898.4 Da    PI: 10.4628
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540251.1_FGP004genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1322.7e-1036731350
                       HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1 13 NReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50
                       NR +A+rsR RK+++i eLe+ v +L+ e +aL  ++ 
  KN540251.1_FGP004 36 NRQSAQRSRVRKLQYISELERSVTTLQMEVSALSPRVA 73
                       ****************************9999987665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.5E-42888IPR004827Basic-leucine zipper domain
CDDcd147033.52E-173379No hitNo description
SuperFamilySSF579598.44E-103482No hitNo description
PfamPF001703.6E-83578IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.0E-123682No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MAQLPPRAPS AAAAAAAGQE WSAMAAAGEF LGILANRQSA QRSRVRKLQY ISELERSVTT  60
LQMEVSALSP RVAFLDHQRS LLTVGNSHLK QRIAALAQDK IFKDAHQEAL KKEIERLRQV  120
YHQQQIKATG GADIATAASM QAKHELLVCE GAAMR
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540251.1_FGP004
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By white light. {ECO:0000269|PubMed:18065552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0962471e-126FP096247.1 Phyllostachys edulis cDNA clone: bphyst038a13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622790.15e-81basic leucine zipper 19
SwissprotQ6K3R94e-82BZP19_ORYSJ; Basic leucine zipper 19
TrEMBLA0A0D9YPV41e-79A0A0D9YPV4_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0CII71e-79A0A0E0CII7_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0JXY87e-80A0A0E0JXY8_ORYPU; Uncharacterized protein
TrEMBLA0A0E0NCD79e-80A0A0E0NCD7_ORYRU; Uncharacterized protein
TrEMBLA2X2Y21e-79A2X2Y2_ORYSI; Uncharacterized protein
STRINGOGLUM02G10470.12e-80(Oryza glumipatula)
STRINGOMERI02G11280.12e-80(Oryza meridionalis)
STRINGORUFI02G10470.11e-80(Oryza rufipogon)
STRINGONIVA02G11660.12e-80(Oryza nivara)
STRINGOPUNC02G09400.11e-80(Oryza punctata)
STRINGORGLA02G0094900.12e-80(Oryza glaberrima)
STRINGOBART02G10550.12e-80(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132238125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58120.11e-53bZIP family protein