PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540256.1_FGP008
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 190aa    MW: 21491.6 Da    PI: 9.0993
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540256.1_FGP008genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.86.1e-0634523755
                       -STCHHHHHHHHHHHHHHH CS
                HLH 37 KlsKaeiLekAveYIksLq 55
                         +Ka+iL +A+eY+ksLq
  KN540256.1_FGP008 34 QTDKASILDEAIEYLKSLQ 52
                       479***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.31E-72679IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.34E-53356No hitNo description
Gene3DG3DSA:4.10.280.102.6E-73460IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MVLHHLQQEK KGSHQRKVES IARTGASLQQ AVSQTDKASI LDEAIEYLKS LQMQVQIMWM  60
TTGIAPMMFP GAHQLMPPMG MGLNTACMPG AQGLNQLQRT THYMNNSLPN QMPQIPSPVM  120
SAPNVPNDMQ SDNRIRGPRN PFLHCNDTLT ATAQVDYYVK FHHYRSFRLQ FLFILQYQFF  180
SGASDQHASN
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act as negative regulator of phyB-dependent light signal transduction (PubMed:17485859). Transcription activator that acts as positive regulator of internode elongation. May function via regulation of cell wall-related genes. May play a role in a drought-associated growth-restriction mechanism in response to drought stress (PubMed:22984180). {ECO:0000269|PubMed:17485859, ECO:0000269|PubMed:22984180}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540256.1_FGP008
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light in dark-grown etiolated seedlings (PubMed:17485859). Circadian oscillation under 12 h light/12 h dark cycle conditions, with peaks in the middle of the light period (PubMed:17485859, PubMed:22984180). Down-regulated by cold and drought stresses (PubMed:22984180). {ECO:0000269|PubMed:17485859, ECO:0000269|PubMed:22984180}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0038241e-176AP003824.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1343_B12.
GenBankAP0040101e-176AP004010.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1351_C05.
GenBankAP0149631e-176AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126151e-176CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648043.12e-78transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X1
RefseqXP_015648044.12e-78transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X1
RefseqXP_015648045.12e-78transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X1
RefseqXP_015648046.12e-78transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X2
SwissprotQ10CH52e-44PIL13_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13
TrEMBLA0A0E0AFL21e-108A0A0E0AFL2_9ORYZ; Uncharacterized protein
STRINGOGLUM07G02040.21e-108(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31743482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59060.14e-14phytochrome interacting factor 3-like 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T
    Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa.
    Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91
    [PMID:17485859]
  3. Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL
    An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15.
    N Biotechnol, 2011. 28(6): p. 788-97
    [PMID:21549224]
  4. Todaka D, et al.
    Rice phytochrome-interacting factor-like protein OsPIL1 functions as a key regulator of internode elongation and induces a morphological response to drought stress.
    Proc. Natl. Acad. Sci. U.S.A., 2012. 109(39): p. 15947-52
    [PMID:22984180]