PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540284.1_FGP004
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 103aa    MW: 10822.3 Da    PI: 4.532
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540284.1_FGP004genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS45.71.1e-14683110190
               GRAS 110 ervHiiDfdis.qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                          vH++D++ +    QW+ L +  a+Rp+gpp  lR+T+v++    s++ l++ +   a  A++l+++++f++ v +++e+l+
  KN540284.1_FGP004   6 GVVHVVDLGGGvDANQWVELVRLVAARPGGPPgLLRLTVVNE----SEDFLSAAAAYVATEAQRLDLSLQFHP-VLSSIEELS 83 
                        689*****9763699*************999989********....9**************************.678888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098514.4951103IPR005202Transcription factor GRAS
PfamPF035143.9E-12683IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
MEAERGVVHV VDLGGGVDAN QWVELVRLVA ARPGGPPGLL RLTVVNESED FLSAAAAYVA  60
TEAQRLDLSL QFHPVLSSIE ELSATATGSI GSRLVVIPGR IFS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540284.1_FGP004
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1209871e-146AC120987.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0007A06, complete sequence.
GenBankAC1362181e-146AC136218.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0039A21, complete sequence.
GenBankAP0149611e-146AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881539.15e-51scarecrow-like protein 3
TrEMBLI1PV422e-49I1PV42_ORYGL; Uncharacterized protein
TrEMBLQ6AUP12e-49Q6AUP1_ORYSJ; Os05g0378200 protein
STRINGOS05T0378200-003e-50(Oryza sativa)
STRINGORGLA05G0124000.13e-50(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP170631012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-09scarecrow-like 3