PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN540293.1_FGP005

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB

Protein Properties

Length: 1045aa MW: 114210 Da PI: 4.6128

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN540293.1_FGP005	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.6	5.1e-17	56	103	1	48
TSSS-HH.HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTte.EdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+e Ed+++v+ v++lG++ W+tIa+ ++ gR +kqc++rw+++l KN540293.1_FGP005 56 KGNWTPEeEDDIIVQMVNKLGPKKWSTIAQALP-GRIGKQCRERWHNHL 103 7998725789*****************.***********97 PP
2	Myb_DNA-binding	47.1	5.4e-15	109	151	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE+ l++a++++G++ W+ + ++ gRt++ +k++w+ KN540293.1_FGP005 109 KEAWTQEEEITLIHAHRMYGNK-WAELTKFLP-GRTDNAIKNHWN 151 579*****************.*****.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	25.994	51	107	IPR017930	Myb domain
SuperFamily	SSF46689	8.99E-28	54	150	IPR009057	Homeodomain-like
SMART	SM00717	3.6E-14	55	105	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.6E-24	57	111	IPR009057	Homeodomain-like
CDD	cd00167	1.07E-13	58	103	No hit	No description
Pfam	PF13921	2.7E-15	59	120	No hit	No description
PROSITE profile	PS51294	19.654	108	158	IPR017930	Myb domain
SMART	SM00717	4.4E-14	108	156	IPR001005	SANT/Myb domain
CDD	cd00167	7.58E-11	111	151	No hit	No description
Gene3D	G3DSA:1.10.10.60	7.0E-21	112	158	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1045 aa Download sequence Send to blast
MAIGVMMTSD NGKAPEKGGE ASGPSSAPQE GEISNEPQRR RPLSGRTTGP TRRSTKGNWT 60 PEEEDDIIVQ MVNKLGPKKW STIAQALPGR IGKQCRERWH NHLNPGINKE AWTQEEEITL 120 IHAHRMYGNK WAELTKFLPG RTDNAIKNHW NSSVKKKVDS YMSSGLLTQV SCLPLNEYSA 180 HCNSSPAVTQ QNSEDSGSYA VREVENSSVC SQSSLAKVSC SQVHNANVAL GCDLQVNANV 240 DNNEAHDSQS SVGHEACYTS VGAVATAMPE VHYHVSSSNF DPDQHLQEEF AQGLNLHMSI 300 DEVPSNSSFA DNPTICRIEN HERSLEPYDV AMEMPLSMLP SDSGAEQKLH FMSEADFNSP 360 NCLKSELWQD ISLQGLLSGP DAVETDSFSR SNHQSDVYSS QADNEFLAPP YLLQTSNSSS 420 VMEATYGQSP QMSVPPSLFC SNVMTDVPSD NRSEPKEMTV SQAEMVTQSS SSSGDAEMSA 480 NPGSSNGSDI PSMMERIPEC ADQQVTNAEE PEASIEKEPS VTPSATADEK QDEGALFYEP 540 PRFPSMDVPF VSCDLVTSGD LQEYSPLGIR QLMRSTMNVC TPMRLWGSPT HDESPDILLK 600 SAAKSFICTP SILKKRHRDL VSPIPDKRIE KKSGTEKDCG VSDTSSIGIQ TCFINATKDD 660 AVINKSVLRI ERSASSKPLE KKLEFSDENK ENLDNTIEQA KDGQSAGNDK HIDEQARGER 720 RTATNITTTY DDLPGNLQPA GILIEHNGDD LVSPDYGKNT MKQKQNTNME SLSVCKEGVS 780 AKKPVELIVD KSSACINVDY EYVNILADTP GIKRGLESPS AWKSPWFVDM QFQGSYFVSP 840 ANGYDALGLV KQINVQTAAA LAEAREVLAS GVQSENINSD KENLENPDAK KEPGATTKLQ 900 AKNKVFHQLE KLKLELETRK KEGRARAYFG RSHSAPPPLP ASPAYFSPLS DYSGLRRSAP 960 STTDPPFAGL LSSPPNASLV VTSGWTSSFS LEIDFEGNGD ESHLTDGDNG GEEHKRHEAP 1020 DAPSFSLGID SDNDDDEECR REEQR

Sequence ? help Back to Top

Protein Sequence Length: 1045 aa Download sequence Send to blast

MAIGVMMTSD NGKAPEKGGE ASGPSSAPQE GEISNEPQRR RPLSGRTTGP TRRSTKGNWT  60
PEEEDDIIVQ MVNKLGPKKW STIAQALPGR IGKQCRERWH NHLNPGINKE AWTQEEEITL  120
IHAHRMYGNK WAELTKFLPG RTDNAIKNHW NSSVKKKVDS YMSSGLLTQV SCLPLNEYSA  180
HCNSSPAVTQ QNSEDSGSYA VREVENSSVC SQSSLAKVSC SQVHNANVAL GCDLQVNANV  240
DNNEAHDSQS SVGHEACYTS VGAVATAMPE VHYHVSSSNF DPDQHLQEEF AQGLNLHMSI  300
DEVPSNSSFA DNPTICRIEN HERSLEPYDV AMEMPLSMLP SDSGAEQKLH FMSEADFNSP  360
NCLKSELWQD ISLQGLLSGP DAVETDSFSR SNHQSDVYSS QADNEFLAPP YLLQTSNSSS  420
VMEATYGQSP QMSVPPSLFC SNVMTDVPSD NRSEPKEMTV SQAEMVTQSS SSSGDAEMSA  480
NPGSSNGSDI PSMMERIPEC ADQQVTNAEE PEASIEKEPS VTPSATADEK QDEGALFYEP  540
PRFPSMDVPF VSCDLVTSGD LQEYSPLGIR QLMRSTMNVC TPMRLWGSPT HDESPDILLK  600
SAAKSFICTP SILKKRHRDL VSPIPDKRIE KKSGTEKDCG VSDTSSIGIQ TCFINATKDD  660
AVINKSVLRI ERSASSKPLE KKLEFSDENK ENLDNTIEQA KDGQSAGNDK HIDEQARGER  720
RTATNITTTY DDLPGNLQPA GILIEHNGDD LVSPDYGKNT MKQKQNTNME SLSVCKEGVS  780
AKKPVELIVD KSSACINVDY EYVNILADTP GIKRGLESPS AWKSPWFVDM QFQGSYFVSP  840
ANGYDALGLV KQINVQTAAA LAEAREVLAS GVQSENINSD KENLENPDAK KEPGATTKLQ  900
AKNKVFHQLE KLKLELETRK KEGRARAYFG RSHSAPPPLP ASPAYFSPLS DYSGLRRSAP  960
STTDPPFAGL LSSPPNASLV VTSGWTSSFS LEIDFEGNGD ESHLTDGDNG GEEHKRHEAP  1020
DAPSFSLGID SDNDDDEECR REEQR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1mse_C	1e-42	56	158	4	105	C-Myb DNA-Binding Domain
1msf_C	1e-42	56	158	4	105	C-Myb DNA-Binding Domain
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN540293.1_FGP005

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ430051	0.0	AJ430051.1 Oryza sativa mRNA for transcription factor myb (myb3R1 gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025878027.1	0.0	LOW QUALITY PROTEIN: transcription factor MYB3R-4-like
TrEMBL	A0A0E0FAR2	0.0	A0A0E0FAR2_9ORYZ; Uncharacterized protein
STRING	OMERI12G04700.2	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2495	38	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11510.2	2e-61	myb domain protein 3r-4