PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540320.1_FGP003
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 153aa    MW: 17165.2 Da    PI: 9.0017
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540320.1_FGP003genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_146.29.6e-152982356
                       XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1  3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56
                       e kr rrk++NRe+ArrsR RK++ ++eL+  v +L+++N++L   l+  +++ 
  KN540320.1_FGP003 29 EKKRKRRKESNRESARRSRMRKQQHLDELTSQVNQLKNQNQQLSMALSLTTQNL 82
                       679****************************************98887766655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.4E-122379No hitNo description
SMARTSM003383.8E-162791IPR004827Basic-leucine zipper domain
PfamPF001701.2E-112977IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.5422992IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.0E-123184No hitNo description
CDDcd147022.01E-153280No hitNo description
PROSITE patternPS0003603449IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MSSGTSSGSS QGTRSSRSED DLNLQAQMEK KRKRRKESNR ESARRSRMRK QQHLDELTSQ  60
VNQLKNQNQQ LSMALSLTTQ NLVAVQAQNS VLQTQEMELQ SRLCALTDIL MCMNNTSATP  120
TPTIPATTTS ACDIFGASSW NQPPIDLYQY QCF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12934KKRKRR
22935KKRKRRK
33035KRKRRK
43136RKRRKE
54350RRSRMRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540320.1_FGP003
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0649030.0AK064903.1 Oryza sativa Japonica Group cDNA clone:J013000L18, full insert sequence.
GenBankAK0723600.0AK072360.1 Oryza sativa Japonica Group cDNA clone:J023058F04, full insert sequence.
GenBankAK0988690.0AK098869.1 Oryza sativa Japonica Group cDNA clone:J013001A19, full insert sequence.
GenBankCT8330390.0CT833039.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA019A05, full insert sequence.
GenBankCT8330400.0CT833040.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA105H15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612149.11e-108bZIP transcription factor 44
TrEMBLA0A0D3H4Y81e-107A0A0D3H4Y8_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0B1491e-107A0A0E0B149_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0EQK51e-107A0A0E0EQK5_9ORYZ; Uncharacterized protein
TrEMBLI1PBZ41e-107I1PBZ4_ORYGL; Uncharacterized protein
STRINGOGLUM09G05500.11e-108(Oryza glumipatula)
STRINGOMERI09G03530.11e-108(Oryza meridionalis)
STRINGORGLA03G0189000.11e-108(Oryza glaberrima)
STRINGOBART09G04710.11e-108(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37403276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.11e-06basic leucine-zipper 44