PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540343.1_FGP005
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 258aa    MW: 28333.9 Da    PI: 6.1613
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540343.1_FGP005genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like103.11.7e-32131186156
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                        k+r++W+p+LH++Fv a++qLGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  KN540343.1_FGP005 131 KTRRCWSPDLHRKFVAALQQLGGPQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 186
                        68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.7128188IPR017930Myb domain
SuperFamilySSF466896.27E-17129188IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-28129187IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-26131186IPR006447Myb domain, plants
PfamPF002494.4E-7133184IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MGLDVGEMGV GAADLSLDLK MFAAKSVGRV RGKDTMGDCI RRLEEEMGKI EVFRRELPLC  60
VRLLADVIDV MKEEVEKKGG DRKEDEEEDA AGDKSKWMST AQLWTGNSGG RDAAAADPEQ  120
TQQQQQQQAR KTRRCWSPDL HRKFVAALQQ LGGPQVATPK QIRELMKVDG LTNDEVKSHL  180
QKYRLHNRPR VPSSTIVNQP IVLMKGLCYI PQEQSSSQSG SPEGPLHFSG SGMAGGGSSA  240
ATVSCEEEDG RSESYGWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-13131184154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-13131184154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-13131184154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-13131184154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540343.1_FGP005
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0704210.0AK070421.1 Oryza sativa Japonica Group cDNA clone:J023048M12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644652.13e-69myb family transcription factor EFM
TrEMBLA0A446L0J47e-81A0A446L0J4_TRITD; Uncharacterized protein
STRINGOGLUM07G01230.11e-68(Oryza glumipatula)
STRINGOS07T0119300-011e-68(Oryza sativa)
STRINGONIVA07G00160.11e-68(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP181737107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.15e-32G2-like family protein