PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540414.1_FGP002
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 225aa    MW: 24334.4 Da    PI: 9.4713
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540414.1_FGP002genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.43.9e-16264159
                       EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEE CS
                 B3  1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgry 59
                       f+kv tpsdv+k++rlv+pk++ae++    +  +e++  l++ed++g+ W+++++y+++s++y
  KN540414.1_FGP002  2 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSAANEKGLLLSFEDRTGKLWRFRYSYWNSSQSY 64
                       89***************************955556889***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.1E-23165IPR015300DNA-binding pseudobarrel domain
CDDcd100176.80E-15166No hitNo description
SuperFamilySSF1019361.2E-15166IPR015300DNA-binding pseudobarrel domain
PfamPF023622.0E-13265IPR003340B3 DNA binding domain
SMARTSM010190.0029286IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MFDKVVTPSD VGKLNRLVIP KQHAEKYFPL DSAANEKGLL LSFEDRTGKL WRFRYSYWNS  60
SQSYGFDFRN INPAVPARQL VFFGSPGTGI HQHPPLPPPP PPPPPPHQLH ITVHHPSPVV  120
TAGLPMVVDS VPHVNNPAAA SKRVRLFGVN LDNPHPDGGQ SSSGHDANEL SLRMPGWQRP  180
APLRSLELPP HMPAGAAGAE SSAASSPSSS SSSKREAHSS LDLDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-36164770B3 domain-containing transcription factor NGA1
5os9_B3e-36164770B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540414.1_FGP002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015691551.11e-104PREDICTED: B3 domain-containing protein Os04g0581400-like
TrEMBLA0A0E0KUB91e-122A0A0E0KUB9_ORYPU; Uncharacterized protein
STRINGOPUNC04G20430.11e-123(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.11e-35B3 family protein