PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540452.1_FGP002
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 197aa    MW: 22314.4 Da    PI: 4.5444
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540452.1_FGP002genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM661.1e-2017101175
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.......kvkaeekew....yfFskrdkkyatgkrkn 75 
                        +ppGfrFhPtdeelv++yL+kkv++++++l +vik+vd+yk+ePwdL++       ++++e++ew    ++  ++++ y+++++++
  KN540452.1_FGP002  17 VPPGFRFHPTDEELVDYYLRKKVAARRIDL-NVIKDVDLYKIEPWDLQErcringgSAAEEQNEWkkggWYAGCSRRDYPQQEESQ 101
                        69****************************.99**************955777776223344455444434444445566555444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-20771IPR003441NAC domain
PROSITE profilePS5100517.36417174IPR003441NAC domain
PfamPF023654.4E-101890IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MDGSSMSSSS TQQQAQVPPG FRFHPTDEEL VDYYLRKKVA ARRIDLNVIK DVDLYKIEPW  60
DLQERCRING GSAAEEQNEW KKGGWYAGCS RRDYPQQEES QTMTHLAAAD HHQINMHLAQ  120
ADPFFDDMHA VDQATTTDWR VLDKFVASQL SNDATNKPAD HYTDEGDILQ VSDKQQEVAA  180
ADYASTSTSS SQIDPWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-161165963Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540452.1_FGP002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0028421e-143AP002842.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0075G19.
GenBankAP0149621e-143AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126141e-143CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
GenBankJN6340761e-143JN634076.1 Oryza sativa Japonica Group secondary wall NAC transcription factor 7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642963.12e-53NAC domain-containing protein 105
RefseqXP_015642964.12e-53NAC domain-containing protein 105
TrEMBLA0A0E0A3W24e-52A0A0E0A3W2_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0HJM14e-52A0A0E0HJM1_ORYNI; Uncharacterized protein
TrEMBLA0A0E0PSE24e-52A0A0E0PSE2_ORYRU; Uncharacterized protein
TrEMBLA2Y8A74e-52A2Y8A7_ORYSI; Uncharacterized protein
TrEMBLI1PYR14e-52I1PYR1_ORYGL; Uncharacterized protein
TrEMBLQ8H6244e-52Q8H624_ORYSJ; Os06g0104200 protein
STRINGOMERI06G00240.17e-79(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2278446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18060.15e-30vascular related NAC-domain protein 1