PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540455.1_FGP003
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 237aa    MW: 27010.3 Da    PI: 7.085
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540455.1_FGP003genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF74.39.9e-241056248
                       ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
             SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                       rien   rqvtf+kRr+g+lKKA ELS+LC+a++ +iifs +gkly+
  KN540455.1_FGP003 10 RIENPVHRQVTFCKRRAGLLKKARELSILCEADIGIIIFSAHGKLYD 56
                       8********************************************97 PP
2K-box28.66e-111141871486
              K-box  14 aeslqqelakLkkeienLqreqRhllGedLe.sLslkeLqqLeqqLekslkkiRskKnellleqieelqkkeke 86 
                        ++  +qe+  Lk+ei+ Lq+ +R + G+  +  ++++eL+ Le+ Le  + +iRs K+ +l++  e lq+k  e
  KN540455.1_FGP003 114 HQDPKQEAMVLKQEINLLQKGLRYIYGNRANeHITVEELNALERYLEIWMYNIRSAKEGMLKAANEILQEKIVE 187
                        67889**********************9986269***********************************99765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.917161IPR002100Transcription factor, MADS-box
SMARTSM004321.0E-33160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-26176IPR002100Transcription factor, MADS-box
CDDcd002654.12E-39279No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-25323IPR002100Transcription factor, MADS-box
PfamPF003191.5E-221055IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-253859IPR002100Transcription factor, MADS-box
PfamPF014861.3E-12114184IPR002487Transcription factor, K-box
PROSITE profilePS512979.382114204IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MARGKVQLRR IENPVHRQVT FCKRRAGLLK KARELSILCE ADIGIIIFSA HGKLYDLATT  60
GTMEELIERY KSASGEQANP CGDQRMVASS CNFVIFPPFY LMLPYHLKLE YVCHQDPKQE  120
AMVLKQEINL LQKGLRYIYG NRANEHITVE ELNALERYLE IWMYNIRSAK EGMLKAANEI  180
LQEKIVEQNG LVDVGMMVAD QQNGHFSTVP LLEEITNPLT ILSGYSTCRG SEMGYSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-15170169MEF2C
5f28_B7e-15170169MEF2C
5f28_C7e-15170169MEF2C
5f28_D7e-15170169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540455.1_FGP003
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0033261e-128AB003326.1 Oryza sativa Japonica Group mRNA for MADS box-like protein, complete cds, clone:R3786.
GenBankAK0691221e-128AK069122.1 Oryza sativa Japonica Group cDNA clone:J023004P21, full insert sequence.
GenBankAY1155561e-128AY115556.1 Oryza sativa (indica cultivar-group) MADS-box protein FDRMADS3 mRNA, complete cds.
GenBankAY5519251e-128AY551925.1 Oryza sativa (japonica cultivar-group) MADS-box protein RMADS220 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650791.11e-142MADS-box transcription factor 26
SwissprotA2YQK91e-143MAD26_ORYSI; MADS-box transcription factor 26
SwissprotQ0J8G81e-143MAD26_ORYSJ; MADS-box transcription factor 26
TrEMBLA0A0D3GVP91e-144A0A0D3GVP9_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0I6J01e-144A0A0E0I6J0_ORYNI; Uncharacterized protein
TrEMBLA0A0E0QDJ41e-144A0A0E0QDJ4_ORYRU; Uncharacterized protein
TrEMBLA3BP021e-144A3BP02_ORYSJ; Uncharacterized protein
STRINGORUFI08G00950.11e-145(Oryza rufipogon)
STRINGOBART08G00930.11e-145(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP149136112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.15e-49AGAMOUS-like 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Lee S, et al.
    Further characterization of a rice AGL12 group MADS-box gene, OsMADS26.
    Plant Physiol., 2008. 147(1): p. 156-68
    [PMID:18354041]
  3. Khong GN, et al.
    OsMADS26 Negatively Regulates Resistance to Pathogens and Drought Tolerance in Rice.
    Plant Physiol., 2015. 169(4): p. 2935-49
    [PMID:26424158]