PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540477.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 165aa    MW: 17709.3 Da    PI: 5.2329
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540477.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.11.8e-14681422598
                        TT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-..SS.SEE..EEEEE- CS
                 B3  25 ehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld..gr.sefelvvkvfr 98 
                         h + ++e +t  + ++ g+sW   +  +++ ++  l +GW+eF+ +n+L +gD +vF+l+  g   + e+ v+++r
  KN540477.1_FGP001  68 MHRLAEPEARTAAVLHSGGKSWATSY--CGHLKMKKLDAGWSEFAVDNRLLVGDACVFELIamGAaGGLEFQVQILR 142
                        56777788899***************..*******************************774466677777777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-1448142IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-1449142IPR015300DNA-binding pseudobarrel domain
CDDcd100172.22E-1151142No hitNo description
SMARTSM010190.006452144IPR003340B3 DNA binding domain
PfamPF023621.1E-1168142IPR003340B3 DNA binding domain
PROSITE profilePS5086310.43375144IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MELDTDPTKL KAKPIIKPKV EPCDDDDELP PPASGSGEDW EATTPLAAGN PFFTALIAKS  60
HLHPKFQMHR LAEPEARTAA VLHSGGKSWA TSYCGHLKMK KLDAGWSEFA VDNRLLVGDA  120
CVFELIAMGA AGGLEFQVQI LRGGLPPEVV TSKGLTSDHP ILIVD
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540477.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1069201e-157AK106920.1 Oryza sativa Japonica Group cDNA clone:002-119-B04, full insert sequence.
GenBankAP0015521e-157AP001552.1 Oryza sativa Japonica Group geneomic DNA, chromosome 6, PAC clone:P0029D06.
GenBankAP0149621e-157AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126141e-157CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643738.11e-99B3 domain-containing protein Os06g0112300
RefseqXP_015643739.11e-99B3 domain-containing protein Os06g0112300
RefseqXP_025882046.11e-99B3 domain-containing protein Os06g0112300
SwissprotQ9LHY91e-100Y6112_ORYSJ; B3 domain-containing protein Os06g0112300
TrEMBLA0A0E0HJU64e-98A0A0E0HJU6_ORYNI; Uncharacterized protein
TrEMBLA2Y8H34e-98A2Y8H3_ORYSI; Uncharacterized protein
STRINGORUFI06G00790.19e-97(Oryza rufipogon)
STRINGOS06T0112300-014e-99(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120461933
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]