PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540496.1_FGP002
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 449aa    MW: 49432 Da    PI: 6.6983
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540496.1_FGP002genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like108.63.4e-34216270155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        k+r+rWtpeLHe+Fv+av++LGGsekAtPk +l+lmkv+gLt++hvkSHLQkYR+
  KN540496.1_FGP002 216 KQRMRWTPELHESFVHAVNKLGGSEKATPKGVLKLMKVDGLTIYHVKSHLQKYRT 270
                        79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.835213273IPR017930Myb domain
SuperFamilySSF466894.3E-18214270IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-31214272IPR009057Homeodomain-like
TIGRFAMsTIGR015573.1E-25216270IPR006447Myb domain, plants
PfamPF002499.4E-10218269IPR001005SANT/Myb domain
PfamPF143791.8E-25320367IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MSSSLPILPK SLKDIPRSHN TQNILMPGQL PNDSMPLHHS ATQSSISHPR ASVVRSSYSA  60
MLGYAANPID SVSSHEGHFM AAPFISQSSN AEMLQSLCNN NTHGGHTVPT FFPAPACGAP  120
DYMDTITVPD NHTQSGSSTV TSDAAKQNEW WADIMNDDWK DILDATATDS QSKSMAQPSN  180
SAASQPAFNQ STSSHSGDIC PVTSPPPNNS NASASKQRMR WTPELHESFV HAVNKLGGSE  240
KATPKGVLKL MKVDGLTIYH VKSHLQKYRT ARYKPDLSEG KTQEGKTTDE LSLDLKASYH  300
YALLREWWYF MFIFLLDQSM DLTEALRLQM EVQKRLHEQL EIQRKLQLRI EEQGKYLQKM  360
FEKQCKSSTQ SVQDPSSGDT ATPSEPSNTV GKDSDAALDP NRIGDNHPKN STNVGANLKT  420
AATESPDSPV IATDGSELPQ EKRRRVHES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-30216274260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-30216274260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-30216274260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-30216274260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-30216274260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-30216274260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-30216274260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-30216274260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1441445KRRRV
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in phosphate starvation signaling. Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes. Functionally redundant with PHR2 and PHR3 in regulating Pi starvation response and Pi homeostasis. {ECO:0000250|UniProtKB:Q10LZ1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540496.1_FGP002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0634860.0AK063486.1 Oryza sativa Japonica Group cDNA clone:001-116-C05, full insert sequence.
GenBankAK1095100.0AK109510.1 Oryza sativa Japonica Group cDNA clone:002-104-D09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632603.10.0protein PHOSPHATE STARVATION RESPONSE 1
SwissprotB8ANX90.0PHR1_ORYSI; Protein PHOSPHATE STARVATION RESPONSE 1
TrEMBLA0A0E0GLV90.0A0A0E0GLV9_ORYNI; Uncharacterized protein
STRINGOMERI03G14520.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19713789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28610.13e-62phosphate starvation response 1