PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN540497.1_FGP006

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 115aa MW: 13166.2 Da PI: 7.8672

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN540497.1_FGP006	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.7	4.2e-16	20	66	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEde l + v+ +G W+ Ia+ ++ t+kqc++rw ++l KN540497.1_FGP006 20 KGGWTREEDEVLRQMVRHHGDCKWTEIAKSLP-SQTGKQCRERWTNHL 66 688***************************.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	21.803	15	70	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.2E-20	15	71	IPR009057	Homeodomain-like
SMART	SM00717	1.1E-13	19	68	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.58E-17	20	71	IPR009057	Homeodomain-like
Pfam	PF00249	3.9E-15	20	66	IPR001005	SANT/Myb domain
CDD	cd00167	2.30E-15	23	66	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 115 aa Download sequence Send to blast
MTTCELMMAA GSNDNLGLIK GGWTREEDEV LRQMVRHHGD CKWTEIAKSL PSQTGKQCRE 60 RWTNHLYSEI KVPLVICVVL RDPSSLSMQF YTWNFFRLCK TPGNFIPPLE GVAGY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-13	18	71	5	58	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269\|PubMed:17293435, ECO:0000269\|PubMed:19279197}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN540497.1_FGP006

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269\|PubMed:17293435}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005197	1e-135	AP005197.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0592C06.
GenBank	AP014963	1e-135	AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015645903.1	3e-31	transcription factor MYB119
Swissprot	Q0JHU7	6e-15	MB3R2_ORYSJ; Transcription factor MYB3R-2
TrEMBL	A0A0P0X4C9	3e-70	A0A0P0X4C9_ORYSJ; Os07g0222501 protein
STRING	ONIVA07G05980.1	4e-40	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP22654	4	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09370.1	3e-17	myb domain protein 3r-3

Publications ? help Back to Top
Kakar KU, et al. A consortium of rhizobacterial strains and biochemical growth elicitors improve cold and drought stress tolerance in rice (Oryza sativa L.). Plant Biol (Stuttg), 2016. 18(3): p. 471-83 [PMID:26681628]